Browse Element(s) Details


OsAffx.14731.2.S1_at

Description tigr:9633.m01472
TID=OsAffx.14731.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1649011/11hypothetical protein
LOC_Os04g102502/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g16440NANA5+9316009..9316578hypothetical protein
LOC_Os05g16450OsAffx.26924.2.S1_at11/115+9320240..9320710hypothetical protein
LOC_Os05g16450OsAffx.26924.3.S1_x_at1/115+9320240..9320710hypothetical protein
LOC_Os05g16460OsAffx.27658.2.S1_at7/115+9324798..9325460hypothetical protein
LOC_Os05g16470NANA5+9331454..9331816hypothetical protein
LOC_Os05g16480OsAffx.26925.1.S1_at11/115+9332094..9334856hypothetical protein
LOC_Os05g16480OsAffx.26926.1.S1_at1/115+9332094..9334856hypothetical protein
LOC_Os05g16490OsAffx.14731.2.S1_at11/115+9336733..9338613hypothetical protein
LOC_Os05g16500NANA5+9340123..9345034hypothetical protein
LOC_Os05g16510NANA5+9347447..9347833hypothetical protein
LOC_Os05g16520OsAffx.26924.3.S1_x_at11/115+9352367..9353812hypothetical protein
LOC_Os05g16520OsAffx.26924.1.S1_at2/115+9352367..9353812hypothetical protein
LOC_Os05g16520OsAffx.26924.1.S1_x_at2/115+9352367..9353812hypothetical protein
LOC_Os05g16520OsAffx.26924.2.S1_at1/115+9352367..9353812hypothetical protein
LOC_Os05g16530OsAffx.26924.1.S1_at11/115+9361898..9363506hypothetical protein
LOC_Os05g16530OsAffx.26924.1.S1_x_at11/115+9361898..9363506hypothetical protein
LOC_Os05g16530OsAffx.26924.3.S1_x_at1/115+9361898..9363506hypothetical protein
LOC_Os05g16530OsAffx.22211.2.S1_s_at1/115+9361898..9363506hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14731.2.S1_at--637--8411Chr05:9337305..9337329 (25 bp)
TGGCCTAACCCACAATTGAATGAAA
LOC_Os05g16490
OsAffx.14731.2.S1_at--73--2331Chr05:9337283..9337307 (25 bp)
AAAGTAGCGGAGACGTGGTGTATCT
LOC_Os05g16490
OsAffx.14731.2.S1_at--518--7491Chr05:9337269..9337293 (25 bp)
GTGGTGTATCTCCTACAACGATGGT
LOC_Os05g16490
OsAffx.14731.2.S1_at--163--2592Chr04:5516979..5517003 (25 bp)
AACGATGGTCACTACCTGATCTTTC
LOC_Os04g10250
OsAffx.14731.2.S1_at--249--1772Chr04:5516992..5517016 (25 bp)
ACCTGATCTTTCTCTTCGCATTGGT
LOC_Os04g10250
OsAffx.14731.2.S1_at--214--10591Chr05:9337231..9337255 (25 bp)
TTCTCTTCGCATTGGTGTGGCTATT
LOC_Os05g16490
OsAffx.14731.2.S1_at--334--3611Chr05:9337222..9337246 (25 bp)
CATTGGTGTGGCTATTGTTCAGGAG
LOC_Os05g16490
OsAffx.14731.2.S1_at--937--7591Chr05:9337194..9337218 (25 bp)
GGGCAGCTACTACGGAAACAAGACA
LOC_Os05g16490
OsAffx.14731.2.S1_at--704--3671Chr05:9336966..9336990 (25 bp)
CTTTGGGAGGTTCACAAGCAATCTT
LOC_Os05g16490
OsAffx.14731.2.S1_at--352--2171Chr05:9336930..9336954 (25 bp)
ACACTTAATCTGCAATACATTCTAT
LOC_Os05g16490
OsAffx.14731.2.S1_at--1072--8211Chr05:9336764..9336788 (25 bp)
GGCACTGGGAATTTCTTTTTCACCA
LOC_Os05g16490
Target Sequence 
TGGCCTAACCCACAATTGAATGAAAGTAGCGGAGACGTGGTGTATCTCCTACAACGATGGTCACTACCTGATCTTTCTCT
TCGCATTGGTGTGGCTATTGTTCAGGAGCAGGGGCAGCTACTACGGAAACAAGACAAGAAGAATCCTCGGTCAGCACTTT
TTGAAGCAGGAGATAAAACTGATGTTGGAGCATTTCTCTCACTCGGTAGGACATTGAGTAAGGTTCAATGGCTGTTTTTG
TTTCGACCTTGGGATAGTTTGCAAACTGTTGAATGGTTGACTTATATGGGAAAATTGATTGCCAAGAGCAACTTTGTTGT
GAGGGGATGCTCAGTAAATCTTTGGGAGGTTCACAAGCAATCTTATTTGGCTGAAACACTTAATCTGCAATACATTCTAT
TGGTGGGAATAATTTGGGATCCAGGAGAATTTGGTTTGCAAGGACTTAGTGTTCAGAGGAAATCAAATGCAGTTCTTGAT
TCATTTGTCATTATGGAGTATTGGTTCATGCAGCAGCTTATGTTGACCATGCATACTGAAAGGCACTGGGAATTTCTTTT
TCACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14731.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis