Browse Element(s) Details


OsAffx.26924.1.S1_at

Description tigr:9633.m01477
TID=OsAffx.26924.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1653011/11hypothetical protein
LOC_Os05g165202/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g16490OsAffx.14731.2.S1_at11/115+9336733..9338613hypothetical protein
LOC_Os05g16500NANA5+9340123..9345034hypothetical protein
LOC_Os05g16510NANA5+9347447..9347833hypothetical protein
LOC_Os05g16520OsAffx.26924.3.S1_x_at11/115+9352367..9353812hypothetical protein
LOC_Os05g16520OsAffx.26924.1.S1_at2/115+9352367..9353812hypothetical protein
LOC_Os05g16520OsAffx.26924.1.S1_x_at2/115+9352367..9353812hypothetical protein
LOC_Os05g16520OsAffx.26924.2.S1_at1/115+9352367..9353812hypothetical protein
LOC_Os05g16530OsAffx.26924.1.S1_at11/115+9361898..9363506hypothetical protein
LOC_Os05g16530OsAffx.26924.1.S1_x_at11/115+9361898..9363506hypothetical protein
LOC_Os05g16530OsAffx.26924.3.S1_x_at1/115+9361898..9363506hypothetical protein
LOC_Os05g16530OsAffx.22211.2.S1_s_at1/115+9361898..9363506hypothetical protein
LOC_Os05g16540OsAffx.26926.1.S1_at11/115+9367494..9369049hypothetical protein
LOC_Os05g16550NANA5+9370238..9371272retrotransposon protein, putative, unclassified
LOC_Os05g16560NANA5+9371551..9373666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g16570OsAffx.14733.1.S1_at10/115+9374613..9377617hypothetical protein
LOC_Os05g16580Os.47463.1.S1_x_at5/115+9379425..9383552transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g16580Os.14491.2.S1_x_at3/115+9379425..9383552transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g16590OsAffx.12109.1.S1_at1/115+9383821..9385402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g16590OsAffx.12109.1.S1_x_at1/115+9383821..9385402transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26924.1.S1_at--955--7472Chr05:9363408..9363432 (25 bp)
GTGGGAGGCAGATGCGACAGGCCAT
LOC_Os05g16530
OsAffx.26924.1.S1_at--204--6212Chr05:9363404..9363428 (25 bp)
GAGGCAGATGCGACAGGCCATAGGG
LOC_Os05g16530
OsAffx.26924.1.S1_at--726--1571Chr05:9362070..9362094 (25 bp)
AGCTCAACGAGCATCTTCACGTGAA
LOC_Os05g16530
OsAffx.26924.1.S1_at--669--4831Chr05:9362069..9362093 (25 bp)
GCTCAACGAGCATCTTCACGTGAAT
LOC_Os05g16530
OsAffx.26924.1.S1_at--46--5931Chr05:9362062..9362086 (25 bp)
GAGCATCTTCACGTGAATGTTCCTT
LOC_Os05g16530
OsAffx.26924.1.S1_at--278--4971Chr05:9362060..9362084 (25 bp)
GCATCTTCACGTGAATGTTCCTTCC
LOC_Os05g16530
OsAffx.26924.1.S1_at--1025--431Chr05:9362058..9362082 (25 bp)
ATCTTCACGTGAATGTTCCTTCCTC
LOC_Os05g16530
OsAffx.26924.1.S1_at--388--5691Chr05:9361954..9361978 (25 bp)
GACTTCTTTGGGTTTAGCCATGGCG
LOC_Os05g16530
OsAffx.26924.1.S1_at--424--2051Chr05:9361953..9361977 (25 bp)
ACTTCTTTGGGTTTAGCCATGGCGA
LOC_Os05g16530
OsAffx.26924.1.S1_at--746--3631Chr05:9361952..9361976 (25 bp)
CTTCTTTGGGTTTAGCCATGGCGAT
LOC_Os05g16530
OsAffx.26924.1.S1_at--668--10571Chr05:9361951..9361975 (25 bp)
TTCTTTGGGTTTAGCCATGGCGATG
LOC_Os05g16530
Target Sequence 
GTGGGAGGCAGATGCGACAGGCCATAGGGGTGGTGGTGAGGAGGAGGTGGGCGGTGCTGGGGTCGGGCGGGAGTCGGGCG
GCGGTGTGGGGTGGAGTCTCTTTGGCCTTTGCTCTGCGGAGGCCAAAAAGAACCGCAAAGCACGGAATGAGGTGAAGAAG
ATGGTTAGGCGCGTCAAACACATGCATGCGCAGCTCAACGAGCATCTTCACGTGAATGTTCCTTCCTCCCCACCGGGCTT
TGAGGCTGAGCCCGATGAGCCCGAGGAGGAGATAGAGGATCCTTTTGCTGGGTTGCCTCCGGATTTTGACTTCTTTGGGT
TTAGCCATGGCGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26924.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis