Browse Element(s) Details


OsAffx.26924.2.S1_at

Description tigr:9633.m01469
TID=OsAffx.26924.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1645011/11hypothetical protein
LOC_Os05g165201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g16420Os.40030.1.S1_s_at8/115+9297346..9297847SHR5-receptor-like kinase, putative, expressed
LOC_Os05g16430Os.27474.1.S1_at9/115+9301003..9307448SHR5-receptor-like kinase, putative, expressed
LOC_Os05g16430Os.53142.1.S1_at3/115+9301003..9307448SHR5-receptor-like kinase, putative, expressed
LOC_Os05g16440NANA5+9316009..9316578hypothetical protein
LOC_Os05g16450OsAffx.26924.2.S1_at11/115+9320240..9320710hypothetical protein
LOC_Os05g16450OsAffx.26924.3.S1_x_at1/115+9320240..9320710hypothetical protein
LOC_Os05g16460OsAffx.27658.2.S1_at7/115+9324798..9325460hypothetical protein
LOC_Os05g16470NANA5+9331454..9331816hypothetical protein
LOC_Os05g16480OsAffx.26925.1.S1_at11/115+9332094..9334856hypothetical protein
LOC_Os05g16480OsAffx.26926.1.S1_at1/115+9332094..9334856hypothetical protein
LOC_Os05g16490OsAffx.14731.2.S1_at11/115+9336733..9338613hypothetical protein
LOC_Os05g16500NANA5+9340123..9345034hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26924.2.S1_at--918--4451Chr05:9320270..9320294 (25 bp)
GCCTCATCAAGGTCGATCATTTGTC
LOC_Os05g16450
OsAffx.26924.2.S1_at--57--371Chr05:9320275..9320299 (25 bp)
ATCAAGGTCGATCATTTGTCCCGAG
LOC_Os05g16450
OsAffx.26924.2.S1_at--845--2891Chr05:9320278..9320302 (25 bp)
AAGGTCGATCATTTGTCCCGAGCGA
LOC_Os05g16450
OsAffx.26924.2.S1_at--721--7211Chr05:9320281..9320305 (25 bp)
GTCGATCATTTGTCCCGAGCGAGCA
LOC_Os05g16450
OsAffx.26924.2.S1_at--110--431Chr05:9320285..9320309 (25 bp)
ATCATTTGTCCCGAGCGAGCACTTC
LOC_Os05g16450
OsAffx.26924.2.S1_at--718--10251Chr05:9320289..9320313 (25 bp)
TTTGTCCCGAGCGAGCACTTCTGCA
LOC_Os05g16450
OsAffx.26924.2.S1_at--832--2051Chr05:9320305..9320329 (25 bp)
ACTTCTGCAGCTGGGGACATCTCTT
LOC_Os05g16450
OsAffx.26924.2.S1_at--230--2011Chr05:9320353..9320377 (25 bp)
ACTCGTGAGCGCCACTCTCCTGTGG
LOC_Os05g16450
OsAffx.26924.2.S1_at--30--7391Chr05:9320357..9320381 (25 bp)
GTGAGCGCCACTCTCCTGTGGCTCG
LOC_Os05g16450
OsAffx.26924.2.S1_at--65--3312Chr05:9320404..9320428 (25 bp)
CACATTTTGCGGAGTCTCTTTTGGC
LOC_Os05g16450
OsAffx.26924.2.S1_at--565--10391Chr05:9320408..9320432 (25 bp)
TTTTGCGGAGTCTCTTTTGGCCTTT
LOC_Os05g16450
Target Sequence 
GCCTCATCAAGGTCGATCATTTGTCCCGAGCGAGCACTTCTGCAGCTGGGGACATCTCTTCCACCTCCACTCAGCCTCCT
CCTACTCGTGAGCGCCACTCTCCTGTGGCTCGTCGTGAGTCGTCTCCCTTATTCCACATTTTGCGGAGTCTCTTTTGGCC
TTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26924.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis