Browse Element(s) Details


Os.27474.1.S1_at

Description gb:AK066537.1
DB_XREF= gi:32976555
TID=Os.27474.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27474 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013070G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013070G07, full insert sequence.
FL= gb:AK066537.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g164309/11SHR5-receptor-like kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g16400OsAffx.19421.1.S1_at3/115+9279739..9286058transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g16410OsAffx.11392.3.S1_at11/115+9289946..9293114hypothetical protein
LOC_Os05g16410OsAffx.11392.2.S1_x_at4/115+9289946..9293114hypothetical protein
LOC_Os05g16410Os.27004.1.A1_at1/115+9289946..9293114hypothetical protein
LOC_Os05g16410OsAffx.25352.1.S1_at1/115+9289946..9293114hypothetical protein
LOC_Os05g16410OsAffx.30367.1.S1_at1/115+9289946..9293114hypothetical protein
LOC_Os05g16410OsAffx.25984.1.S1_x_at1/115+9289946..9293114hypothetical protein
LOC_Os05g16410OsAffx.25984.1.S1_at1/115+9289946..9293114hypothetical protein
LOC_Os05g16420Os.40030.1.S1_s_at8/115+9297346..9297847SHR5-receptor-like kinase, putative, expressed
LOC_Os05g16430Os.27474.1.S1_at9/115+9301003..9307448SHR5-receptor-like kinase, putative, expressed
LOC_Os05g16430Os.53142.1.S1_at3/115+9301003..9307448SHR5-receptor-like kinase, putative, expressed
LOC_Os05g16440NANA5+9316009..9316578hypothetical protein
LOC_Os05g16450OsAffx.26924.2.S1_at11/115+9320240..9320710hypothetical protein
LOC_Os05g16450OsAffx.26924.3.S1_x_at1/115+9320240..9320710hypothetical protein
LOC_Os05g16460OsAffx.27658.2.S1_at7/115+9324798..9325460hypothetical protein
LOC_Os05g16470NANA5+9331454..9331816hypothetical protein
LOC_Os05g16480OsAffx.26925.1.S1_at11/115+9332094..9334856hypothetical protein
LOC_Os05g16480OsAffx.26926.1.S1_at1/115+9332094..9334856hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27474.1.S1_at--1052--8671Chr05:9306961..9306985 (25 bp)
TGTGCTGGAAATTGTCGCCGGTCGA
LOC_Os05g16430
Os.27474.1.S1_at--656--7191Chr05:9306981..9307005 (25 bp)
GTCGATCCAACACCAATAATTCCTT
LOC_Os05g16430
Os.27474.1.S1_at--841--10591Chr05:9307028..9307140 (25 bp)
TTCGAATGGCTCTGGGACCTGTATG
LOC_Os05g16430
Os.27474.1.S1_at--320--3231Chr05:9307149..9307173 (25 bp)
CAAGTTCTTGGAATCGTTGACCCTT
LOC_Os05g16430
Os.27474.1.S1_at--122--3891Chr05:9307302..9307326 (25 bp)
CTGTCTGAGGTGGTCGTGAAGCCAA
LOC_Os05g16430
Os.27474.1.S1_at--530--7351Chr05:9307317..9307341 (25 bp)
GTGAAGCCAAGTTACATCACCGAGT
LOC_Os05g16430
Os.27474.1.S1_at--328--10131Chr05:9307368..9307392 (25 bp)
TATGCCACTAGCAGCTACTCAGGCT
LOC_Os05g16430
Os.27474.1.S1_at--652--911Chr05:9307388..9307412 (25 bp)
AGGCTCTACCAACCCTGAGTTTAGC
LOC_Os05g16430
Os.27474.1.S1_at--416--1271Chr05:9307423..9307447 (25 bp)
AGATAGAGCCTCTTACCCAATCATG
LOC_Os05g16430
Os.27474.1.S1_at--633--1811Chr05:9307437..9307461 (25 bp)
ACCCAATCATGATCTCTAGAGCTAG
NONE
Os.27474.1.S1_at--915--1351Chr05:9307454..9307478 (25 bp)
AGAGCTAGTCAAGTCGGAATGCGAA
NONE
Target Sequence 
TGTGCTGGAAATTGTCGCCGGTCGATCCAACACCAATAATTCCTTGGAGGAAAGCAAGATCTATCTCTTCGAATGGCTCT
GGGACCTGTATGAAAAGGAGCAAGTTCTTGGAATCGTTGACCCTTCTCTCAAGGATTTCAACAACAATGAAGCTTTTAGG
GTCATCCGTGTTGCGCTCCTCTGCACACAGGGCTCACCGCACCAACGACCACCAATGTCGAAGGCCTTGGCAATGTTGAC
CGGAGAAGTTGAGCTGTCTGAGGTGGTCGTGAAGCCAAGTTACATCACCGAGTGGCAGCTTAGGGATGTAAATAGAAGCT
ATGCCACTAGCAGCTACTCAGGCTCTACCAACCCTGAGTTTAGCACACAGAAAGAGATAGAGCCTCTTACCCAATCATGA
TCTCTAGAGCTAGTCAAGTCGGAATGCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27474.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis