Browse Element(s) Details


OsAffx.12109.1.S1_x_at

Description tigr:9630.m01796
TID=OsAffx.12109.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g165901/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g16530OsAffx.26924.1.S1_at11/115+9361898..9363506hypothetical protein
LOC_Os05g16530OsAffx.26924.1.S1_x_at11/115+9361898..9363506hypothetical protein
LOC_Os05g16530OsAffx.26924.3.S1_x_at1/115+9361898..9363506hypothetical protein
LOC_Os05g16530OsAffx.22211.2.S1_s_at1/115+9361898..9363506hypothetical protein
LOC_Os05g16540OsAffx.26926.1.S1_at11/115+9367494..9369049hypothetical protein
LOC_Os05g16550NANA5+9370238..9371272retrotransposon protein, putative, unclassified
LOC_Os05g16560NANA5+9371551..9373666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g16570OsAffx.14733.1.S1_at10/115+9374613..9377617hypothetical protein
LOC_Os05g16580Os.47463.1.S1_x_at5/115+9379425..9383552transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g16580Os.14491.2.S1_x_at3/115+9379425..9383552transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g16590OsAffx.12109.1.S1_at1/115+9383821..9385402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g16590OsAffx.12109.1.S1_x_at1/115+9383821..9385402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g16600OsAffx.22947.2.S1_x_at8/115+9388858..9393435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16600OsAffx.22947.1.S1_x_at7/115+9388858..9393435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16600OsAffx.22947.3.S1_x_at5/115+9388858..9393435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16600OsAffx.22947.5.S1_x_at1/115+9388858..9393435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16610NANA5+9396669..9397868transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g16620Os.56292.1.S1_x_at1/115+9399028..9403076transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12109.1.S1_x_at--471--191Chr02:11039462..11039486 (25 bp)
ATTTCAGAGCTTTGTCACAGATTCC
NONE
OsAffx.12109.1.S1_x_at--382--10531Chr02:11039460..11039484 (25 bp)
TTCAGAGCTTTGTCACAGATTCCAC
NONE
OsAffx.12109.1.S1_x_at--852--9651Chr02:11039459..11039483 (25 bp)
TCAGAGCTTTGTCACAGATTCCACA
NONE
OsAffx.12109.1.S1_x_at--370--3432Chr05:9384615..9384659 (24 bp)
CAGAGCTTTGTCACAGATTCCACAA
LOC_Os05g16590
OsAffx.12109.1.S1_x_at--1050--5891Chr02:11039456..11039480 (25 bp)
GAGCTTTGTCACAGATTCCACAACT
NONE
OsAffx.12109.1.S1_x_at--1097--1551Chr02:11039455..11039479 (25 bp)
AGCTTTGTCACAGATTCCACAACTA
NONE
OsAffx.12109.1.S1_x_at--105--10811Chr02:11039451..11039475 (25 bp)
TTGTCACAGATTCCACAACTACTTG
NONE
OsAffx.12109.1.S1_x_at--832--7091Chr02:11039449..11039473 (25 bp)
GTCACAGATTCCACAACTACTTGAT
NONE
OsAffx.12109.1.S1_x_at--574--3311Chr02:11039447..11039471 (25 bp)
CACAGATTCCACAACTACTTGATTA
NONE
OsAffx.12109.1.S1_x_at--378--5292Chr07:21452844..21452863 (20 bp)
GAATGGTTGGACAACTACTCGATTA
NONE
OsAffx.12109.1.S1_x_at--675--5412Chr07:21452825..21452863 (25 bp)
GAACGATTGGACAACTACTCGATTA
NONE
Target Sequence 
ATTTCAGAGCTTTGTCACAGATTCCACAACTACTTGATTACTCGAGAATGGTTGGACAACTACTCGATTACTCGAGAACG
ATTGGACAACTACTCGATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12109.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis