Browse Element(s) Details


OsAffx.14733.1.S1_at

Description tigr:9633.m01481
TID=OsAffx.14733.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to ABC transporter protein 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1657010/11hypothetical protein
LOC_Os11g390201/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g16520OsAffx.26924.3.S1_x_at11/115+9352367..9353812hypothetical protein
LOC_Os05g16520OsAffx.26924.1.S1_at2/115+9352367..9353812hypothetical protein
LOC_Os05g16520OsAffx.26924.1.S1_x_at2/115+9352367..9353812hypothetical protein
LOC_Os05g16520OsAffx.26924.2.S1_at1/115+9352367..9353812hypothetical protein
LOC_Os05g16530OsAffx.26924.1.S1_at11/115+9361898..9363506hypothetical protein
LOC_Os05g16530OsAffx.26924.1.S1_x_at11/115+9361898..9363506hypothetical protein
LOC_Os05g16530OsAffx.26924.3.S1_x_at1/115+9361898..9363506hypothetical protein
LOC_Os05g16530OsAffx.22211.2.S1_s_at1/115+9361898..9363506hypothetical protein
LOC_Os05g16540OsAffx.26926.1.S1_at11/115+9367494..9369049hypothetical protein
LOC_Os05g16550NANA5+9370238..9371272retrotransposon protein, putative, unclassified
LOC_Os05g16560NANA5+9371551..9373666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g16570OsAffx.14733.1.S1_at10/115+9374613..9377617hypothetical protein
LOC_Os05g16580Os.47463.1.S1_x_at5/115+9379425..9383552transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g16580Os.14491.2.S1_x_at3/115+9379425..9383552transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g16590OsAffx.12109.1.S1_at1/115+9383821..9385402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g16590OsAffx.12109.1.S1_x_at1/115+9383821..9385402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g16600OsAffx.22947.2.S1_x_at8/115+9388858..9393435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16600OsAffx.22947.1.S1_x_at7/115+9388858..9393435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16600OsAffx.22947.3.S1_x_at5/115+9388858..9393435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16600OsAffx.22947.5.S1_x_at1/115+9388858..9393435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16610NANA5+9396669..9397868transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g16620Os.56292.1.S1_x_at1/115+9399028..9403076transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14733.1.S1_at--605--4151NONE
CCCAGGCTCGGGATAGAGGATCCTG
NONE
OsAffx.14733.1.S1_at--492--6171Chr05:9377087..9377110 (24 bp)
GAGGATCCTGATTTGGTGCTGCTCG
LOC_Os05g16570
OsAffx.14733.1.S1_at--904--3832Chr11:24538485..24538621 (24 bp)
CTGCTCGATGAGCTGATCAATCATG
NONE
OsAffx.14733.1.S1_at--316--371Chr05:9377119..9377143 (25 bp)
ATCAATCATGTCGATTTGGATACGA
LOC_Os05g16570
OsAffx.14733.1.S1_at--1048--211Chr05:9377132..9377156 (25 bp)
ATTTGGATACGATTGTGTGGCTGGA
LOC_Os05g16570
OsAffx.14733.1.S1_at--242--8751Chr05:9377230..9377253 (24 bp)
TGATAGTGGAAACTGTATTCGGCAT
LOC_Os05g16570
OsAffx.14733.1.S1_at--944--6871Chr05:9377243..9377267 (25 bp)
GTATTCGGCATGTCCAAAACACACA
LOC_Os05g16570
OsAffx.14733.1.S1_at--166--2411Chr05:9377260..9377284 (25 bp)
AACACACAAGGCAAACTATTCAGAA
LOC_Os05g16570
OsAffx.14733.1.S1_at--538--9051Chr05:9377467..9377491 (25 bp)
TGCAGTTGATCTCTGTATTTCAGCC
LOC_Os05g16570
OsAffx.14733.1.S1_at--963--472Chr11:22730304..22730323 (20 bp)
ATCTGTCATTACTTACTAATTGCTA
LOC_Os11g39020
OsAffx.14733.1.S1_at--281--2911Chr05:9377524..9377548 (25 bp)
AAGGTTAATGATTTTTGCTGCCAAT
LOC_Os05g16570
Target Sequence 
CCCAGGCTCGGGATAGAGGATCCTGATTTGGTGCTGCTCGATGAGCTGATCAATCATGTCGATTTGGATACGATTGTGTG
GCTGGAGAGCCACCTCAAGACGCAGGAAGTGCCAATGATAGTGGAAACTGTATTCGGCATGTCCAAAACACACAAGGCAA
ACTATTCAGAATACGTTTTGGCGAAGGCAATTTGGGTGGAGACTCAGTATGCCACATGGGAGAAGCAGCAGGAGGAGATT
GAGCAGACAAAGGAACTGATAAACAGACTTGGGGCTGGAGTTAACGCAGGGCGTGTGTGGAGCGAGCAGAAGATCAATGC
AGTTGATCTCTGTATTTCAGCCATCTGTCATTACTTACTAATTGCTAAATGGAAAAGGTTAATGATTTTTGCTGCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14733.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis