Browse Element(s) Details


OsAffx.14759.1.S1_s_at

Description tigr:9633.m01744
TID=OsAffx.14759.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to dna mismatch repair protein msh2 (mus1)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1927011/11DNA mismatch repair protein MSH2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g19220Os.45173.1.S1_x_at3/115+11139428..11147060retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19230NANA5+11148434..11149092retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19240OsAffx.12588.1.A1_at2/115+11150645..11154929retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g19250NANA5+11161154..11165792retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g19260NANA5+11166367..11166708retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g19270OsAffx.14759.1.S1_s_at11/115+11168717..11177270DNA mismatch repair protein MSH2, putative, expressed
LOC_Os05g19280Os.6060.1.S1_at11/115+11179693..11185627expressed protein
LOC_Os05g19290NANA5+11190301..11190540hypothetical protein
LOC_Os05g19300OsAffx.4378.1.S1_at11/115+11198961..11199368hypothetical protein
LOC_Os05g19300OsAffx.4378.1.S1_x_at11/115+11198961..11199368hypothetical protein
LOC_Os05g19310Os.27691.1.S1_x_at6/115+11201165..11204748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19310Os.27691.2.S1_x_at2/115+11201165..11204748retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006298biological_processmismatch repair
GO:0003684molecular_functiondamaged DNA binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14759.1.S1_s_at--741--1551Chr05:11176355..11176379 (25 bp)
AGCTTTGGTATCCACGTTGCAGAAT
LOC_Os05g19270
OsAffx.14759.1.S1_s_at--808--1451Chr05:11176435..11176459 (25 bp)
AGAAGATTTTTCAACTGCGCCCAAT
LOC_Os05g19270
OsAffx.14759.1.S1_s_at--273--4551Chr05:11176451..11176475 (25 bp)
GCGCCCAATTTTTCCGATGATTCAA
LOC_Os05g19270
OsAffx.14759.1.S1_s_at--1033--7851Chr05:11176819..11176843 (25 bp)
GGTATTTAGCCCAGACGATGTGACT
LOC_Os05g19270
OsAffx.14759.1.S1_s_at--1054--4571Chr05:11176857..11176881 (25 bp)
GCGCTCGCCTTTTGTTGGAGGAATT
LOC_Os05g19270
OsAffx.14759.1.S1_s_at--696--931Chr05:11176875..11176899 (25 bp)
AGGAATTGGCCTCATTGCCTCTAGA
LOC_Os05g19270
OsAffx.14759.1.S1_s_at--526--651Chr05:11176962..11176986 (25 bp)
ATGCAGCTGATAATCCTTGGCTTCA
LOC_Os05g19270
OsAffx.14759.1.S1_s_at--291--9612Chr05:11177075..11177099 (25 bp)
TCATCTGATCCTCTTTTTGTCCATA
LOC_Os05g19270
OsAffx.14759.1.S1_s_at--643--2291Chr05:11177162..11177186 (25 bp)
AAATGATCTGCCAACTGCCAAGTGC
LOC_Os05g19270
OsAffx.14759.1.S1_s_at--208--4911Chr05:11177185..11177209 (25 bp)
GCTTCAGCTAGCACACTGCGAGTAA
LOC_Os05g19270
OsAffx.14759.1.S1_s_at--319--2091Chr05:11177210..11177234 (25 bp)
ACATAGCCACTGTATCTGTACGTAT
LOC_Os05g19270
Target Sequence 
AGCTTTGGTATCCACGTTGCAGAATTCGCTAATTTTCCAGAAGCTGTTGTTGCTCTTGCAAAAAGCAAAGCAGAAGAATT
AGAAGATTTTTCAACTGCGCCCAATTTTTCCGATGATTCAAAAGATGAGGTTGGATCAAAACGCAAGAGGGTATTTAGCC
CAGACGATGTGACTAGAGGAGCTGCTCGCGCTCGCCTTTTGTTGGAGGAATTGGCCTCATTGCCTCTAGACGAGATGGAT
GGCACCAAGGCCGCAGAAACCGTCACCAAACTGAAATCCGACTTCGAGAAAGATGCAGCTGATAATCCTTGGCTTCAGCA
GTTCCTTTGAAGGAAATCATTCACTGCTTGAATGGAGATTTTGTTTTGCAAGTTAGAATCACTGAAAGTAAGGCTGATGC
AAGGATCATCTGATCCTCTTTTTGTCCATATCCATCAGCAGATTACCATATATGTAAATTATCTAGGCTTAGCATCAGAT
CTATGCTATGGAAAATGATCTGCCAACTGCCAAGTGCTTCAGCTAGCACACTGCGAGTAAACATAGCCACTGTATCTGTA
CGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14759.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis