Browse Element(s) Details


OsAffx.14788.1.S1_at

Description tigr:9633.m02053
TID=OsAffx.14788.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to NBS-LRR disease resistance protein homologue
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2325011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23210Os.46306.1.S1_x_at2/115+13161877..13171652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23210Os.14491.2.S1_x_at1/115+13161877..13171652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23210Os.47463.1.S1_x_at1/115+13161877..13171652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23220Os.29976.1.S1_at4/115+13174217..13177210transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23220Os.27037.1.A1_at1/115+13174217..13177210transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23230Os.52531.1.S1_at11/115+13180482..13182219expressed protein
LOC_Os05g23240OsAffx.26977.1.S1_at11/115+13183290..13184183Zinc knuckle family protein
LOC_Os05g23250OsAffx.14788.1.S1_at11/115+13191900..13199470Leucine Rich Repeat family protein, expressed
LOC_Os05g23260Os.8610.1.S1_at11/115+13204696..13208436Microsomal signal peptidase 18 kDa subunit, putative, expressed
LOC_Os05g23270OsAffx.26978.1.S1_at7/115+13208296..13209842hypothetical protein
LOC_Os05g23280OsAffx.1647.1.S1_at1/115+13211817..13214198retrotransposon protein, putative, unclassified
LOC_Os05g23290Os.9332.2.S1_x_at2/115+13215584..13220428retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23290OsAffx.22722.1.S1_x_at1/115+13215584..13220428retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23290Os.9332.2.S1_at1/115+13215584..13220428retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23300NANA5+13222759..13224075retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14788.1.S1_at--251--6151Chr05:13192529..13192553 (25 bp)
GAGGTGGACAATACACTGGCCCATC
LOC_Os05g23250
OsAffx.14788.1.S1_at--411--7131Chr05:13192501..13192525 (25 bp)
GTCTTCGTCATCAACTACCTTGGAT
LOC_Os05g23250
OsAffx.14788.1.S1_at--469--6271Chr05:13192479..13192503 (25 bp)
GATGTCCAACATTGCAAGGTGCCGC
LOC_Os05g23250
OsAffx.14788.1.S1_at--925--2891Chr05:13192464..13192488 (25 bp)
AAGGTGCCGCTGGATCAGTGGACAT
LOC_Os05g23250
OsAffx.14788.1.S1_at--1139--291Chr05:13192402..13192426 (25 bp)
ATACGAGTGTGACGACCTTACCTGC
LOC_Os05g23250
OsAffx.14788.1.S1_at--455--3891Chr05:13192293..13192317 (25 bp)
CTGTGTCAGTTCAAATCTCTTCCGA
LOC_Os05g23250
OsAffx.14788.1.S1_at--480--531Chr05:13192198..13192222 (25 bp)
ATCGCTATGGATGGTCGGTTGTTCA
LOC_Os05g23250
OsAffx.14788.1.S1_at--1052--7911Chr05:13192182..13192206 (25 bp)
GGTTGTTCAAGCATGACATCCCTAC
LOC_Os05g23250
OsAffx.14788.1.S1_at--674--9331Chr05:13192139..13192163 (25 bp)
TCGCCTCTCTCATGGAACTGAACAT
LOC_Os05g23250
OsAffx.14788.1.S1_at--575--3831Chr05:13192071..13192095 (25 bp)
CTGCTCCCCATGCTTGAAGTTGTAA
LOC_Os05g23250
OsAffx.14788.1.S1_at--547--7031Chr05:13192050..13192074 (25 bp)
GTAAAAGTTTCCTACTGTCCTGAAT
LOC_Os05g23250
Target Sequence 
GAGGTGGACAATACACTGGCCCATCATCGTCTTCGTCATCAACTACCTTGGATGTCCAACATTGCAAGGTGCCGCTGGAT
CAGTGGACATTGCTTTGTCACCTCCCTGCCCTACATGAGCTGAGGATATACGAGTGTGACGACCTTACCTGCAGCTCACC
TGAGATTATTGAAAGCCTTTCTTCCATTAAACAGATAACAGTAGAGTGTCAAGACATGGTAGAACTGCCAGCAAGTCTGT
GTCAGTTCAAATCTCTTCCGAAATTGATTCTGTGGAAATGCTTGAAGCTGAAGTCATTGCCAGAGAGCACGAAGCATCTC
ACGTCCCTGAAATCGCTATGGATGGTCGGTTGTTCAAGCATGACATCCCTACCGGAAGGGCTGGGCCACCTCGCCTCTCT
CATGGAACTGAACATCAATGACTGCCCACACCTCAAATCCTTGCCGGAGAGTATACAACTGCTCCCCATGCTTGAAGTTG
TAAAAGTTTCCTACTGTCCTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14788.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis