Browse Element(s) Details


OsAffx.14821.1.S1_at

Description tigr:9633.m02269
TID=OsAffx.14821.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g252409/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25220NANA5+14542340..14544368retrotransposon protein, putative, unclassified
LOC_Os05g25230NANA5+14554597..14557257hypothetical protein
LOC_Os05g25240OsAffx.14821.1.S1_at9/115+14568899..14569914hypothetical protein
LOC_Os05g25250NANA5+14581551..14581949hypothetical protein
LOC_Os05g25260Os.56944.1.S1_at11/115+14584695..14586586AP2 domain containing protein, expressed
LOC_Os05g25270OsAffx.14822.1.S1_at11/115+14589504..14590776hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14821.1.S1_at--374--771Chr05:14567387..14567411 (25 bp)
ATGTCGGCGACCCTCTTGAGCTACA
NONE
OsAffx.14821.1.S1_at--627--4831NONE
GCTACACAAAGAACAGCTCCTTCTC
NONE
OsAffx.14821.1.S1_at--130--3871Chr05:14569254..14569278 (25 bp)
CTGTTTAAGCGACCCGTCACCAAGA
LOC_Os05g25240
OsAffx.14821.1.S1_at--296--7111Chr05:14569269..14569293 (25 bp)
GTCACCAAGACCAGGGCAGCAAGCT
LOC_Os05g25240
OsAffx.14821.1.S1_at--637--5151Chr05:14569287..14569311 (25 bp)
GCAAGCTCAACAGACGTAGTGGCTA
LOC_Os05g25240
OsAffx.14821.1.S1_at--175--1091Chr05:14569304..14569328 (25 bp)
AGTGGCTAAGTTGGACCTTGATACA
LOC_Os05g25240
OsAffx.14821.1.S1_at--595--5911Chr05:14569362..14569386 (25 bp)
GAGCTCACCGGCACATTGAGGAGGA
LOC_Os05g25240
OsAffx.14821.1.S1_at--172--911Chr05:14569386..14569410 (25 bp)
AGGCGGTTAGTCAAAGCTCGAGGCC
LOC_Os05g25240
OsAffx.14821.1.S1_at--720--4211Chr05:14569409..14569433 (25 bp)
CCGCCAGTGCATGGAAGAGGCTCTT
LOC_Os05g25240
OsAffx.14821.1.S1_at--928--1571Chr05:14569450..14569474 (25 bp)
AGCTCGCCAACACCGATTTTATGGC
LOC_Os05g25240
OsAffx.14821.1.S1_at--888--10091Chr05:14569469..14569493 (25 bp)
TATGGCCAAGAGGTGCTCGTTGTTA
LOC_Os05g25240
Target Sequence 
ATGTCGGCGACCCTCTTGAGCTACACAAAGAACAGCTCCTTCTCCACTGCCACCTCCTCCTGTTTAAGCGACCCGTCACC
AAGACCAGGGCAGCAAGCTCAACAGACGTAGTGGCTAAGTTGGACCTTGATACAGAGGGGTGGGAGAGTGGGGAGGAGGT
TGATCTCGAGCTCACCGGCACATTGAGGAGGAGGCGGTTAGTCAAAGCTCGAGGCCGCCAGTGCATGGAAGAGGCTCTTG
GAGAGGCAGAGTTTGAGCTCGCCAACACCGATTTTATGGCCAAGAGGTGCTCGTTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14821.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis