Browse Element(s) Details


OsAffx.14822.1.S1_at

Description tigr:9633.m02272
TID=OsAffx.14822.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2527011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25240OsAffx.14821.1.S1_at9/115+14568899..14569914hypothetical protein
LOC_Os05g25250NANA5+14581551..14581949hypothetical protein
LOC_Os05g25260Os.56944.1.S1_at11/115+14584695..14586586AP2 domain containing protein, expressed
LOC_Os05g25270OsAffx.14822.1.S1_at11/115+14589504..14590776hypothetical protein
LOC_Os05g25280OsAffx.31069.1.S1_x_at1/115+14596637..14599484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25290NANA5+14600556..14603169transposon protein, putative, unclassified
LOC_Os05g25300OsAffx.22850.1.S1_x_at2/115+14603422..14608807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25300OsAffx.10596.1.S1_x_at1/115+14603422..14608807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25300OsAffx.25260.1.S1_at1/115+14603422..14608807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25300OsAffx.22850.1.S1_at1/115+14603422..14608807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25310Os.7310.1.S1_at11/115+14610167..14623239AMP-binding enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14822.1.S1_at--681--6111Chr05:14590080..14590104 (25 bp)
GAGTGTCTTCATTTGTTCTAGAATA
LOC_Os05g25270
OsAffx.14822.1.S1_at--150--1671Chr05:14589990..14590014 (25 bp)
AGCCCCTGATCGGAAGCCATCTGAG
LOC_Os05g25270
OsAffx.14822.1.S1_at--24--2791Chr05:14589958..14589982 (25 bp)
AAGAGAGAGTGCACCTCGTCTCACT
LOC_Os05g25270
OsAffx.14822.1.S1_at--259--9331Chr05:14589914..14589938 (25 bp)
TCGCCATCAGCGACTGCAAAGCTCG
LOC_Os05g25270
OsAffx.14822.1.S1_at--671--1291Chr05:14589839..14589863 (25 bp)
AGATGCGCGGCGAACACCTGGGATC
LOC_Os05g25270
OsAffx.14822.1.S1_at--820--7651Chr05:14589820..14589844 (25 bp)
GGGATCCCATCACGGTGACCAAGGA
LOC_Os05g25270
OsAffx.14822.1.S1_at--921--8011Chr05:14589798..14589822 (25 bp)
GGAGGGAACCTTAATCCGCGCCAAT
LOC_Os05g25270
OsAffx.14822.1.S1_at--739--9291Chr05:14589784..14589808 (25 bp)
TCCGCGCCAATAACAGTGACCGAAG
LOC_Os05g25270
OsAffx.14822.1.S1_at--744--7631Chr05:14589692..14589716 (25 bp)
GGGAGGGAGCTTGTTGTCCTCAACA
LOC_Os05g25270
OsAffx.14822.1.S1_at--947--9691Chr05:14589673..14589697 (25 bp)
TCAACAAGCAGAGGCCGGATCCGAC
LOC_Os05g25270
OsAffx.14822.1.S1_at--1054--4311Chr05:14589646..14589670 (25 bp)
CCTTGCGTCTAGATCCAGTGGTGAA
LOC_Os05g25270
Target Sequence 
GAGTGTCTTCATTTGTTCTAGAATAACCTATAGATGTCACAGTGGTTTGAGGAGAAAAGCAGTGGTTTTGGGAGAAAAAG
AAGTGGTCCAAGCCCCTGATCGGAAGCCATCTGAGAAAGTGCAAGAGAGAGTGCACCTCGTCTCACTGTTAAGGGGACTC
CCACCATCGCCATCAGCGACTGCAAAGCTCGCCGACTGCGCCGGAGTGGGGATAGGAGAGGTGGGGGCGTCACCATCCAC
CAGATGCGCGGCGAACACCTGGGATCCCATCACGGTGACCAAGGAGGGAACCTTAATCCGCGCCAATAACAGTGACCGAA
GGAGAGGCGGCAGGGAGGGAGCTCGATCGTCGTGGCGGCGGAGAGGGAGCTCGATCGTCACGGAGGCGGGGAGGGAGCTT
GTTGTCCTCAACAAGCAGAGGCCGGATCCGACGACCTTGCGTCTAGATCCAGTGGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14822.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis