Browse Element(s) Details


Os.56944.1.S1_at

Description gb:AK110613.1
DB_XREF= gi:32995822
TID=Os.56944.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.56944 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-168-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-168-H06, full insert sequence.
FL= gb:AK110613.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2526011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25240OsAffx.14821.1.S1_at9/115+14568899..14569914hypothetical protein
LOC_Os05g25250NANA5+14581551..14581949hypothetical protein
LOC_Os05g25260Os.56944.1.S1_at11/115+14584695..14586586AP2 domain containing protein, expressed
LOC_Os05g25270OsAffx.14822.1.S1_at11/115+14589504..14590776hypothetical protein
LOC_Os05g25280OsAffx.31069.1.S1_x_at1/115+14596637..14599484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25290NANA5+14600556..14603169transposon protein, putative, unclassified
LOC_Os05g25300OsAffx.22850.1.S1_x_at2/115+14603422..14608807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25300OsAffx.10596.1.S1_x_at1/115+14603422..14608807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25300OsAffx.25260.1.S1_at1/115+14603422..14608807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25300OsAffx.22850.1.S1_at1/115+14603422..14608807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25310Os.7310.1.S1_at11/115+14610167..14623239AMP-binding enzyme family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56944.1.S1_at--833--2571Chr05:14585757..14585781 (25 bp)
AACGACAGCTCGTTCAACCCGTTCG
LOC_Os05g25260
Os.56944.1.S1_at--720--4611Chr05:14585958..14585982 (25 bp)
GCGAGCAACGCCGTCAGCGTGAAAT
LOC_Os05g25260
Os.56944.1.S1_at--238--7111Chr05:14585970..14585994 (25 bp)
GTCAGCGTGAAATGACGCCGCTGCC
LOC_Os05g25260
Os.56944.1.S1_at--679--1511Chr05:14586052..14586076 (25 bp)
AGCAGCAACCAGCAGCAATGTTATT
LOC_Os05g25260
Os.56944.1.S1_at--543--1511Chr05:14586062..14586086 (25 bp)
AGCAGCAATGTTATTACTACTAGTA
LOC_Os05g25260
Os.56944.1.S1_at--786--1811Chr05:14586130..14586154 (25 bp)
ACCCAGCGGAGTTTGTACTCCCTAG
LOC_Os05g25260
Os.56944.1.S1_at--269--7011Chr05:14586144..14586168 (25 bp)
GTACTCCCTAGTGAAGTGAGCAGTA
LOC_Os05g25260
Os.56944.1.S1_at--677--8671Chr05:14586213..14586237 (25 bp)
TGTGCGTGAGCTGCCTTGAATGGCA
LOC_Os05g25260
Os.56944.1.S1_at--448--8911Chr05:14586219..14586243 (25 bp)
TGAGCTGCCTTGAATGGCACGTCTC
LOC_Os05g25260
Os.56944.1.S1_at--227--5291Chr05:14586230..14586254 (25 bp)
GAATGGCACGTCTCCCGCGTGGAAA
LOC_Os05g25260
Os.56944.1.S1_at--919--7151Chr05:14586239..14586263 (25 bp)
GTCTCCCGCGTGGAAACGGAACAGT
LOC_Os05g25260
Target Sequence 
AACGACAGCTCGTTCAACCCGTTCGCGTCGCCGACCTCCGTGCTCCGGTACGCGGCAGCGGANGAGGTGACCGCGCCATC
CTTNGAGCACCTCCTNGTCGAGNTGGGCGACCTNTCGGCGCCGCCGCCTTCCACCAAGGCGGCGGAGTTCGACTGGCTGC
CGTGGTGGGAAGGGGAGGACTTNGTGACGGCGGGGCTGACGGCGAGCAACGCCGTCAGCGTGAAATGACGCCGCTGCCCC
CCTCCACCCATTTNGCGCTNTCGGGGCGGGAAAAGTTGGCGGGAGACGGCGCATCAGCAGCAACCAGCAGCAATGTTATT
ACTACTAGTATTATATTAATTTTATTATTATTATTTCGTGGCAGTAAAAAAAAACCCAGCGGAGTTTGTACTCCCTAGTG
AAGTGAGCAGTAGTAGTAAATGGTGGTGGCGTGGGGCCCAAGGCGGGCGCTCGCTTTGTGCGTGAGCTGCCTTGAATGGC
ACGTCTCCCGCGTGGAAACGGAACAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56944.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis