Browse Element(s) Details


OsAffx.14855.1.S1_at

Description tigr:9633.m02536
TID=OsAffx.14855.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AF419595 AT3g51670T18N14_50
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2782011/11CRAL/TRIO, N-terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27800OsAffx.4447.1.S1_at11/115+16124622..16125050expressed protein
LOC_Os05g27810OsAffx.14854.1.S1_at10/115+16131037..16132524hypothetical protein
LOC_Os05g27820OsAffx.14855.1.S1_at11/115+16138396..16141993CRAL/TRIO, N-terminus family protein, expressed
LOC_Os05g27830OsAffx.14856.1.S1_at11/115+16149594..16149977hypothetical protein
LOC_Os05g27840NANA5+16151336..16152927retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g27850NANA5+16159363..16162457transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27860Os.47463.1.S1_x_at5/115+16164514..16167734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27860Os.14491.2.S1_x_at4/115+16164514..16167734transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14855.1.S1_at--599--2531Chr05:16139273..16139297 (25 bp)
AACTACCCTGAGATGGTCGCGCGCA
LOC_Os05g27820
OsAffx.14855.1.S1_at--765--6731Chr05:16139405..16139429 (25 bp)
GTTCATCAACGTGCCCTGGTACTTC
LOC_Os05g27820
OsAffx.14855.1.S1_at--695--9891Chr05:16139424..16139448 (25 bp)
TACTTCTCGGTGCTGTTCTCCATGA
LOC_Os05g27820
OsAffx.14855.1.S1_at--757--9551Chr05:16139521..16139634 (25 bp)
TCTTCAAGTTCATCCGGCCGGAGCT
LOC_Os05g27820
OsAffx.14855.1.S1_at--884--4091Chr05:16139691..16139715 (25 bp)
CGAAGCCGGCGTCCGAGTTCACCAT
LOC_Os05g27820
OsAffx.14855.1.S1_at--447--6071Chr05:16139705..16139729 (25 bp)
GAGTTCACCATCAAGGGCGGCGAGA
LOC_Os05g27820
OsAffx.14855.1.S1_at--535--4691Chr05:16139721..16139745 (25 bp)
GCGGCGAGAAGGTCTTCCTAGAGAT
LOC_Os05g27820
OsAffx.14855.1.S1_at--213--7811Chr05:16139731..16139755 (25 bp)
GGTCTTCCTAGAGATCGACGGCATC
LOC_Os05g27820
OsAffx.14855.1.S1_at--1058--4251Chr05:16141525..16141549 (25 bp)
CCGGCGCGACGATAACGTGGGACCT
LOC_Os05g27820
OsAffx.14855.1.S1_at--172--3971Chr05:16141600..16141624 (25 bp)
CGGAGGACAGCTACACGCTGTGCGT
LOC_Os05g27820
OsAffx.14855.1.S1_at--349--7351Chr05:16141665..16141689 (25 bp)
GTGCACAACGCCTTCACGGCGAGGG
LOC_Os05g27820
Target Sequence 
AACTACCCTGAGATGGTCGCGCGCAAGGTGTTCATCAACGTGCCCTGGTACTTCTCGGTGCTGTTCTCCATGATCTCGCC
GTTCCTCACGGAGCGCACCAAGAGCAAGTTCGTCATCGCGCGCGAGGGCAACGTCGCCGAGACGCTCTTCAAGTTCATCC
GGCCGGAGCTGGTGCCGGTGCAGTACGGCGGGCTGAGCCGCGCCGGCGACCTGGAGAACGGCCCGCCGAAGCCGGCGTCC
GAGTTCACCATCAAGGGCGGCGAGAAGGTCTTCCTAGAGATCGACGGCATCGAGGCCGGCGCGACGATAACGTGGGACCT
GGTGGTGGGCGGGTGGGAGCTGGAGTACGGCGCGGAGTACGTGCCGGCGGCGGAGGACAGCTACACGCTGTGCGTGGAGC
GGACGAGGAAGGTGCCGGCCGCCGCCGACGAGCCGGTGCACAACGCCTTCACGGCGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14855.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis