Browse Element(s) Details


OsAffx.14860.1.S1_at

Description tigr:9633.m02589
TID=OsAffx.14860.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2831011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28280Os.1378.1.S1_at11/115+16474078..16477646DNA-binding protein, 42 kDa containing protein, expressed
LOC_Os05g28290Os.11731.1.S1_at11/115+16481663..16484384Ran-binding protein 1 homolog c, putative, expressed
LOC_Os05g28300Os.18379.1.S2_at11/115+16488396..16499850expressed protein
LOC_Os05g28300Os.18379.1.S1_at10/115+16488396..16499850expressed protein
LOC_Os05g28310OsAffx.14860.1.S1_at11/115+16502029..16502646hypothetical protein
LOC_Os05g28320OsAffx.4454.1.S1_at11/115+16504231..16505142Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g28330OsAffx.4455.1.S1_at9/115+16506391..16509122hypothetical protein
LOC_Os05g28340NANA5+16512960..16515729retrotransposon protein, putative, unclassified
LOC_Os05g28350OsAffx.4456.1.S1_at2/115+16522859..16523668AP2 domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14860.1.S1_at--384--1791Chr05:16502099..16502123 (25 bp)
ACCGACGCTCCAAGACAGCATGGGA
LOC_Os05g28310
OsAffx.14860.1.S1_at--460--2571Chr05:16502200..16502224 (25 bp)
AAGCGGCGACGTGAACGTCCCTCAT
LOC_Os05g28310
OsAffx.14860.1.S1_at--164--8651Chr05:16502355..16502379 (25 bp)
TGGGCTGCGGCTACTCACGCCGACA
LOC_Os05g28310
OsAffx.14860.1.S1_at--92--7731Chr05:16502425..16502449 (25 bp)
GGTGGCAGTGGAAATTGGCAACTAC
LOC_Os05g28310
OsAffx.14860.1.S1_at--1081--3151Chr05:16502437..16502461 (25 bp)
AATTGGCAACTACGGCAGAAATCGG
LOC_Os05g28310
OsAffx.14860.1.S1_at--451--1891Chr05:16502473..16502497 (25 bp)
ACGTTGTTACTACTGCTGCTCACAC
LOC_Os05g28310
OsAffx.14860.1.S1_at--1079--9911Chr05:16502483..16502507 (25 bp)
TACTGCTGCTCACACCATCGAGATG
LOC_Os05g28310
OsAffx.14860.1.S1_at--399--511Chr05:16502499..16502523 (25 bp)
ATCGAGATGTAGTGGCGACGCCAAT
LOC_Os05g28310
OsAffx.14860.1.S1_at--568--3031Chr05:16502521..16502545 (25 bp)
AATGCCAACGGTGGATCCTCAGCTC
LOC_Os05g28310
OsAffx.14860.1.S1_at--992--9071Chr05:16502565..16502589 (25 bp)
TGCTCCAAACCGATGCCTTTGCTGT
LOC_Os05g28310
OsAffx.14860.1.S1_at--960--6351Chr05:16502576..16502600 (25 bp)
GATGCCTTTGCTGTGCTCGGATGAG
LOC_Os05g28310
Target Sequence 
ACCGACGCTCCAAGACAGCATGGGAGAGCAGGCGACAGTTGGCGGTTGACGAGCTCGATGGCGGCAAGCGGATCCAGGCG
GCAGCCGGCGACATGGGTGGGAAGCGGCGACGTGAACGTCCCTCATCGATTCCCCCGTGCCGTCGGTGGGCGGGCAGGCG
GAGGCGATGCCGTGGGCTGCGGCTACTCACGCCGACAAGGGAGGCAGCGGGTGGGCGGGCGGGTGGATCTGACGGCGGCG
GAGGTGGCAGTGGAAATTGGCAACTACGGCAGAAATCGGCGATGACAACGACGTTGTTACTACTGCTGCTCACACCATCG
AGATGTAGTGGCGACGCCAATGCCAACGGTGGATCCTCAGCTCCATCCCTGTCCGCCGCCGCTGCTCCAAACCGATGCCT
TTGCTGTGCTCGGATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14860.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis