Browse Element(s) Details


OsAffx.14888.1.S1_at

Description tigr:9633.m02770
TID=OsAffx.14888.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3050011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30454Os.55625.1.S1_at11/115+17563862..17568673Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os05g30454OsAffx.24949.2.S1_at4/115+17563862..17568673Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os05g30454OsAffx.9087.1.S1_at2/115+17563862..17568673Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os05g30470OsAffx.27085.1.S1_at9/115+17574963..17575793hypothetical protein
LOC_Os05g30480Os.54759.1.S1_at1/115+17578611..17580620Luminal binding protein 4 precursor, putative, expressed
LOC_Os05g30490NANA5+17583469..17584251Harpin-induced protein 1 containing protein
LOC_Os05g30500OsAffx.14888.1.S1_at11/115+17589788..17590596expressed protein
LOC_Os05g30510OsAffx.4475.1.S1_at6/115+17599508..17600668expressed protein
LOC_Os05g30520NANA5+17605072..17606172retrotransposon protein, putative, unclassified
LOC_Os05g30530Os.8428.1.S1_at11/115+17612112..1761479840S ribosomal protein S4, putative, expressed
LOC_Os05g30530Os.47405.1.A1_s_at11/115+17612112..1761479840S ribosomal protein S4, putative, expressed
LOC_Os05g30530Os.40563.1.S1_x_at1/115+17612112..1761479840S ribosomal protein S4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14888.1.S1_at--675--4031Chr05:17590095..17590119 (25 bp)
CGTTCAGGATGGAGGACTTCGAGTT
LOC_Os05g30500
OsAffx.14888.1.S1_at--63--4671Chr05:17590157..17590181 (25 bp)
GCGTGCTCCGGCAGGACAACGAAGA
LOC_Os05g30500
OsAffx.14888.1.S1_at--217--1911Chr05:17590344..17590368 (25 bp)
ACGGGCCCACTGACCAGTGAACATT
LOC_Os05g30500
OsAffx.14888.1.S1_at--217--5851Chr05:17590355..17590379 (25 bp)
GACCAGTGAACATTAGCTAGCTAGC
LOC_Os05g30500
OsAffx.14888.1.S1_at--15--4872Chr05:17590370..17590394 (25 bp)
GCTAGCTAGCTGATCTCGTTGGAAT
LOC_Os05g30500
OsAffx.14888.1.S1_at--1162--1391Chr05:17590387..17590411 (25 bp)
GTTGGAATTGGTCCTTCGGAAACAG
LOC_Os05g30500
OsAffx.14888.1.S1_at--961--911Chr05:17590413..17590437 (25 bp)
AGGCATTTTCGTTGGACTTTTCTGA
LOC_Os05g30500
OsAffx.14888.1.S1_at--397--6271Chr05:17590440..17590464 (25 bp)
GATGTCCTAGTTTGAAATGTTCACA
LOC_Os05g30500
OsAffx.14888.1.S1_at--1146--5091Chr05:17590474..17590498 (25 bp)
GCACTAGTAGTATCACGCAATCCAT
LOC_Os05g30500
OsAffx.14888.1.S1_at--291--1851Chr05:17590488..17590512 (25 bp)
ACGCAATCCATGTGCCAGTCTTGAT
LOC_Os05g30500
OsAffx.14888.1.S1_at--938--7751Chr05:17590542..17590566 (25 bp)
GGTGATCATGGACTATCCCAGCTGT
LOC_Os05g30500
Target Sequence 
CGTTCAGGATGGAGGACTTCGAGTTCGAGGAGGCCGCCGCCGGCGCCGGCGACGACGACGCGGCGTGCTCCGGCAGGACA
ACGAAGAAGCAGAGATCAGGCGGCGGCGGTCACGGCGCCGCCGTGGAGAAGCGGCGGACGGAGAAGGAGGCTGCCGCCGC
CGCCGCCGAGGACGACGACGACGAGCAGGAGGGAGGCGAGGTCGTCGAAGGGAAGGAGGAACACCGACCGGGCCGCCGCG
TCGAGGCCCACGGGCCCACTGACCAGTGAACATTAGCTAGCTAGCTGATCTCGTTGGAATTGGTCCTTCGGAAACAGAAG
GCATTTTCGTTGGACTTTTCTGATTGATGTCCTAGTTTGAAATGTTCACATGTATGATAGCACTAGTAGTATCACGCAAT
CCATGTGCCAGTCTTGATTTGCAAATTGCAATGTACTTATCAAAATTGGTGATCATGGACTATCCCAGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14888.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis