Browse Element(s) Details


OsAffx.14901.1.S1_at

Description tigr:9633.m02881
TID=OsAffx.14901.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3155011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31510OsAffx.26201.1.S1_at6/115+18247628..18250537transposon protein, putative, Mutator sub-class
LOC_Os05g31520OsAffx.4491.1.S1_at9/115+18253197..18256563hypothetical protein
LOC_Os05g31530Os.50205.1.S1_at11/115+18260243..18265939NB-ARC domain containing protein, expressed
LOC_Os05g31530Os.50205.1.S1_x_at11/115+18260243..18265939NB-ARC domain containing protein, expressed
LOC_Os05g31540NANA5+18270068..18270400retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g31550OsAffx.14901.1.S1_at11/115+18273181..18276849NB-ARC domain containing protein
LOC_Os05g31560NANA5+18281364..18281823retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g31570Os.50205.2.S1_at10/115+18295956..18301673NB-ARC domain containing protein, expressed
LOC_Os05g31570Os.50205.1.S1_x_at5/115+18295956..18301673NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14901.1.S1_at--402--231Chr05:18276315..18276339 (25 bp)
ATATTGCAACAACTTCACGGGTATG
LOC_Os05g31550
OsAffx.14901.1.S1_at--201--9151Chr05:18276345..18276369 (25 bp)
TGCCCAAGTCTCAGTGAAGTCCTTT
LOC_Os05g31550
OsAffx.14901.1.S1_at--131--9071Chr05:18276415..18276439 (25 bp)
TGCTACAACTTAGTGGCTTTCCCTA
LOC_Os05g31550
OsAffx.14901.1.S1_at--397--3671Chr05:18276431..18276455 (25 bp)
CTTTCCCTACAAGCTTATCGTATCT
LOC_Os05g31550
OsAffx.14901.1.S1_at--113--6691Chr05:18276503..18276527 (25 bp)
GTTGCCTGGGCGCTCTAAGAAGTCT
LOC_Os05g31550
OsAffx.14901.1.S1_at--149--9331Chr05:18276564..18276588 (25 bp)
TCCCAGCATTCAACGTCTATCAAAT
LOC_Os05g31550
OsAffx.14901.1.S1_at--618--8951Chr05:18276615..18276639 (25 bp)
TGACAGCCTAACAACATTACCCGAA
LOC_Os05g31550
OsAffx.14901.1.S1_at--215--1071Chr05:18276639..18276663 (25 bp)
AGGGATGCATAATCTGACAGCTCTC
LOC_Os05g31550
OsAffx.14901.1.S1_at--1069--471Chr05:18276668..18276692 (25 bp)
ATCTGGCTATTTGGAACTGCCCTAG
LOC_Os05g31550
OsAffx.14901.1.S1_at--392--9971Chr05:18276704..18276728 (25 bp)
TACCGGAAGGTCTCCAGCAGAGGCT
LOC_Os05g31550
OsAffx.14901.1.S1_at--814--1411Chr05:18276754..18276778 (25 bp)
AGACAATGCCCTACGCTGGTGAGAA
LOC_Os05g31550
Target Sequence 
ATATTGCAACAACTTCACGGGTATGCCACCTGCCCAAGTCTCAGTGAAGTCCTTTGAAGATGAGGGCATGCATAATTTGG
AACGGATAGAAATCGAATTCTGCTACAACTTAGTGGCTTTCCCTACAAGCTTATCGTATCTGAGGATATGCAGCTGCAAT
GTACTTGAGGACCTACCTGAAGGACTGGGTTGCCTGGGCGCTCTAAGAAGTCTGTCAATTGATTATAACCCAAGACTGAA
GTCCCTGCCTCCCAGCATTCAACGTCTATCAAATCTGACCAGGCTCTACCTGGGAACTAATGACAGCCTAACAACATTAC
CCGAAGGGATGCATAATCTGACAGCTCTCAATGATCTGGCTATTTGGAACTGCCCTAGTTTAAAGGCTTTACCGGAAGGT
CTCCAGCAGAGGCTGCACAGCCTGGAAAAGCTCTTTATTAGACAATGCCCTACGCTGGTGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis