Browse Element(s) Details


OsAffx.14916.1.S1_at

Description tigr:9633.m02968
TID=OsAffx.14916.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3241011/11glycosyl hydrolase family 20 protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32390Os.49239.1.S1_at11/115+18808857..18817716GTP-binding protein, putative, expressed
LOC_Os05g32400NANA5+18820276..18826921retrotransposon protein, putative, unclassified
LOC_Os05g32410OsAffx.14916.1.S1_at11/115+18831511..18831999glycosyl hydrolase family 20 protein, putative
LOC_Os05g32420NANA5+18836176..18837358expressed protein
LOC_Os05g32430Os.11735.1.S1_at11/115+18845063..18850153phosphatase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14916.1.S1_at--253--7431Chr05:18831640..18831664 (25 bp)
GTGTTCATCAACACGACGCGACCAT
LOC_Os05g32410
OsAffx.14916.1.S1_at--197--1871Chr05:18831652..18831676 (25 bp)
ACGACGCGACCATTCGTGGCGCAGG
LOC_Os05g32410
OsAffx.14916.1.S1_at--59--8391Chr05:18831765..18831789 (25 bp)
GGCGACCGTCGCATCGAGCTTCCGA
LOC_Os05g32410
OsAffx.14916.1.S1_at--197--532Chr05:18831777..18831801 (25 bp)
ATCGAGCTTCCGACGAATCGCTGCT
LOC_Os05g32410
OsAffx.14916.1.S1_at--747--1551Chr05:18831781..18831805 (25 bp)
AGCTTCCGACGAATCGCTGCTGCAA
LOC_Os05g32410
OsAffx.14916.1.S1_at--75--4171Chr05:18831810..18831834 (25 bp)
CGCCGAGCTCCCGATGAATGGTAGC
LOC_Os05g32410
OsAffx.14916.1.S1_at--549--4791Chr05:18831816..18831840 (25 bp)
GCTCCCGATGAATGGTAGCTGCAAC
LOC_Os05g32410
OsAffx.14916.1.S1_at--244--671Chr05:18831823..18831847 (25 bp)
ATGAATGGTAGCTGCAACCATCGCC
LOC_Os05g32410
OsAffx.14916.1.S1_at--160--6331Chr05:18831903..18831927 (25 bp)
GATGAATCGCCACCGCAACCATCAT
LOC_Os05g32410
OsAffx.14916.1.S1_at--736--371Chr05:18831926..18831950 (25 bp)
ATCAAGCTCCCGTCGCTGATGAATC
LOC_Os05g32410
OsAffx.14916.1.S1_at--495--1591Chr05:18831930..18831954 (25 bp)
AGCTCCCGTCGCTGATGAATCGCCG
LOC_Os05g32410
Target Sequence 
GTGTTCATCAACACGACGCGACCATTCGTGGCGCAGGAGCTGAACCAGCTGCCATGGCATTCAGTACCTCAACCTCTCGG
CCAACCAGTTTGCCGGCCGCCGTCGCATCGCATTGAGTCCGCCGCGGCGACCGTCGCATCGAGCTTCCGACGAATCGCTG
CTGCAACCATCGCCGAGCTCCCGATGAATGGTAGCTGCAACCATCGCCGGACTCCCACCGATTCAGCGCCGACGTCGCAT
CGAGACCACCGCCCGCCGTCGCTGATGAATCGCCACCGCAACCATCATCAAGCTCCCGTCGCTGATGAATCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14916.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis