Browse Element(s) Details


Os.11735.1.S1_at

Description gb:AK067160.1
DB_XREF= gi:32977178
TID=Os.11735.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11735 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013096L04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096L04, full insert sequence.
FL= gb:AK067160.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3243011/11phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32400NANA5+18820276..18826921retrotransposon protein, putative, unclassified
LOC_Os05g32410OsAffx.14916.1.S1_at11/115+18831511..18831999glycosyl hydrolase family 20 protein, putative
LOC_Os05g32420NANA5+18836176..18837358expressed protein
LOC_Os05g32430Os.11735.1.S1_at11/115+18845063..18850153phosphatase, putative, expressed
LOC_Os05g32440OsAffx.27119.1.S1_at11/115+18858318..18859736expressed protein
LOC_Os05g32450OsAffx.14917.1.S1_at10/115+18860547..18863614hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008420molecular_functionCTD phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11735.1.S1_at--1116--9911Chr05:18849564..18849588 (25 bp)
TACGGTCACCCATGTTGTTGCTTTG
LOC_Os05g32430
Os.11735.1.S1_at--537--1471Chr05:18849602..18849626 (25 bp)
AGAAGGCTCGCTGGGCTGTTAGTAA
LOC_Os05g32430
Os.11735.1.S1_at--704--6591Chr05:18849654..18849678 (25 bp)
GATTGAGGCCGCAAATTTCCGATGG
LOC_Os05g32430
Os.11735.1.S1_at--290--1011Chr05:18849695..18849719 (25 bp)
AGGATTTTCCTGTAGCTCGACCAAA
LOC_Os05g32430
Os.11735.1.S1_at--1141--4211Chr05:18849740..18849764 (25 bp)
CCGCTGATGCTCCTATCTCAAAGGA
LOC_Os05g32430
Os.11735.1.S1_at--429--1851Chr05:18849812..18849836 (25 bp)
ACGAAAATGTCGCTGATGCTGGTAG
LOC_Os05g32430
Os.11735.1.S1_at--569--4591Chr05:18849963..18849987 (25 bp)
GCTCGTAACCAGCTTATACCTTTTG
LOC_Os05g32430
Os.11735.1.S1_at--440--8131Chr05:18849999..18850023 (25 bp)
GGACATTGCTGTAGCTGCGAACCTA
LOC_Os05g32430
Os.11735.1.S1_at--160--151Chr05:18850025..18850049 (25 bp)
ATTAGGATACGTACTCTTGCGAAAT
LOC_Os05g32430
Os.11735.1.S1_at--1144--1251Chr05:18850107..18850131 (25 bp)
AGATTTTTCCTACTGATCTGGGCCT
LOC_Os05g32430
Os.11735.1.S1_at--343--8431Chr05:18850127..18850151 (25 bp)
GGCCTCCAGCCATATACTTTAGTTG
LOC_Os05g32430
Target Sequence 
TACGGTCACCCATGTTGTTGCTTTGGATCTAGGAACGGAGAAGGCTCGCTGGGCTGTTAGTAACAAGAAGTTTTTGGTCC
ACCCCCGCTGGATTGAGGCCGCAAATTTCCGATGGCAACGGCAACAAGAGGAGGATTTTCCTGTAGCTCGACCAAAGGAG
ANGGGTAAANGAAAATNCCGCTGATGCTCCTATCTCAAAGGAGAACGGTGACNAAAAATGCCNGCTGATNNCNNNTAACG
CNAAAGAAGGGTAACGAAAATGTCGCTGATGCTGGTAGCNACAAAGGAGGGGAGTAAAGAAAATGCTGATGATGCTGCTA
ACTCNAGAGGAGGAGTAAAGAAAATGCTGATGATGCTGNTAACGCAGAGAAGAGTAAATCTGATGGTGCTGCCAGCGGTG
CAACTGGCTCGTAACCAGCTTATACCTTTTGTAAACCGTTGCGGACATTGCTGTAGCTGCGAACCTACATTAGGATACGT
ACTCTTGCGAAATAGAAATTGTGGCTAGTTTGAATCGGACTGTGCGGATGATGGTGTTATGGTACATGTGAGATTTTTCC
TACTGATCTGGGCCTCCAGCCATATACTTTAGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11735.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis