Browse Element(s) Details


OsAffx.27119.1.S1_at

Description tigr:9633.m02971
TID=OsAffx.27119.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3244011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32420NANA5+18836176..18837358expressed protein
LOC_Os05g32430Os.11735.1.S1_at11/115+18845063..18850153phosphatase, putative, expressed
LOC_Os05g32440OsAffx.27119.1.S1_at11/115+18858318..18859736expressed protein
LOC_Os05g32450OsAffx.14917.1.S1_at10/115+18860547..18863614hypothetical protein
LOC_Os05g32460OsAffx.23856.2.S1_at11/115+18875744..18877004VQ motif family protein
LOC_Os05g32470Os.54691.1.S1_x_at3/115+18880590..18884566hypothetical protein
LOC_Os05g32470OsAffx.10222.1.S1_x_at2/115+18880590..18884566hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27119.1.S1_at--215--1051Chr05:18859024..18859048 (25 bp)
AGGTGATCAAGAAGTACGCCAAGAA
LOC_Os05g32440
OsAffx.27119.1.S1_at--1070--7351Chr05:18858998..18859022 (25 bp)
GTGAAGCCGCTGTACGAGAAGCTCT
LOC_Os05g32440
OsAffx.27119.1.S1_at--464--4731Chr05:18858990..18859014 (25 bp)
GCTGTACGAGAAGCTCTCCCAGATC
LOC_Os05g32440
OsAffx.27119.1.S1_at--157--1451Chr05:18858982..18859006 (25 bp)
AGAAGCTCTCCCAGATCCCCAAGAA
LOC_Os05g32440
OsAffx.27119.1.S1_at--519--1291Chr05:18858970..18858994 (25 bp)
AGATCCCCAAGAATCAGAGCAACAG
LOC_Os05g32440
OsAffx.27119.1.S1_at--95--4391Chr05:18858964..18858988 (25 bp)
CCAAGAATCAGAGCAACAGCAGCGG
LOC_Os05g32440
OsAffx.27119.1.S1_at--847--5371Chr05:18858906..18858930 (25 bp)
GAAGAAGCCGTTCAGCTTCTCGATG
LOC_Os05g32440
OsAffx.27119.1.S1_at--868--6251Chr05:18858624..18858648 (25 bp)
GATGTCCGGCGGCATTAGCGTGGGC
LOC_Os05g32440
OsAffx.27119.1.S1_at--114--9351Chr05:18858538..18858562 (25 bp)
TCGCGCACTGCAAGAGCACAATGGG
LOC_Os05g32440
OsAffx.27119.1.S1_at--743--3331Chr05:18858533..18858557 (25 bp)
CACTGCAAGAGCACAATGGGCGGCG
LOC_Os05g32440
OsAffx.27119.1.S1_at--1009--4491Chr05:18858509..18858533 (25 bp)
GCCGTGACCATGTGCTCGCGCAAGG
LOC_Os05g32440
Target Sequence 
AGGTGATCAAGAAGTACGCCAAGAAGGTGAAGCCGCTGTACGAGAAGCTCTCCCAGATCCCCAAGAATCAGAGCAACAGC
AGCGGCCAGCCGCTGCAGCAGCAGCAGCAGCAGGGGTTGAAGAAGCCGTTCAGCTTCTCGATGCGCAAGAAGCGCGGCGA
CGACGACCACGCCGCAGCGGCCCCGGCCGCGGCGGCCGCCGTGGCCGCGGAGGTGGGCGGCGGCGGCAAGTACGCGCACT
CCAACTCCTTCTCCGGGAACCTCCGGTTCCCGCGCCAGAAGCGGTGCGCGGCGAGCTGCCCGTCCTCGATGCGCTCCTCG
CCGAGCCACTCCGGCCTGCTCACCTTCGGCGGCGCGGGCGGCGTCGGCTTCCCCGACGTGCCAGCCGCCGCCGCGGCGGC
GATGTCCGGCGGCATTAGCGTGGGCCCCGTGTCGCTGTCCACGGCGTCGTCGATGGAGGAGCTCCAGAGCGCCATCGAGG
GCGCCATCGCGCACTGCAAGAGCACAATGGGCGGCGCCGTGACCATGTGCTCGCGCAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27119.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis