Browse Element(s) Details


OsAffx.23856.2.S1_at

Description tigr:9633.m02973
TID=OsAffx.23856.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3246011/11VQ motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32440OsAffx.27119.1.S1_at11/115+18858318..18859736expressed protein
LOC_Os05g32450OsAffx.14917.1.S1_at10/115+18860547..18863614hypothetical protein
LOC_Os05g32460OsAffx.23856.2.S1_at11/115+18875744..18877004VQ motif family protein
LOC_Os05g32470Os.54691.1.S1_x_at3/115+18880590..18884566hypothetical protein
LOC_Os05g32470OsAffx.10222.1.S1_x_at2/115+18880590..18884566hypothetical protein
LOC_Os05g32480OsAffx.7680.1.S1_at6/115+18887197..18893017transposon protein, putative, Mutator sub-class
LOC_Os05g32490OsAffx.14920.1.S1_at11/115+18893843..18895043hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23856.2.S1_at--517--5751Chr05:18876646..18876950 (25 bp)
GACGGTGATAATTTTGACACCCTGT
LOC_Os05g32460
OsAffx.23856.2.S1_at--921--6431Chr05:18876640..18876944 (25 bp)
GATAATTTTGACACCCTGTGGGACG
LOC_Os05g32460
OsAffx.23856.2.S1_at--532--151Chr05:18876636..18876659 (24 bp)
ATTTTGACACCCTGTGGGACGTCTA
LOC_Os05g32460
OsAffx.23856.2.S1_at--250--10251Chr05:18876634..18876658 (25 bp)
TTTGACACCCTGTGGGACGTCTACC
LOC_Os05g32460
OsAffx.23856.2.S1_at--82--8671Chr05:18876624..18876648 (25 bp)
TGTGGGACGTCTACCCAGCGCTGTG
LOC_Os05g32460
OsAffx.23856.2.S1_at--24--5771Chr05:18876619..18876643 (25 bp)
GACGTCTACCCAGCGCTGTGGTTGA
LOC_Os05g32460
OsAffx.23856.2.S1_at--820--7151Chr05:18876616..18876640 (25 bp)
GTCTACCCAGCGCTGTGGTTGACTG
LOC_Os05g32460
OsAffx.23856.2.S1_at--767--9951Chr05:18876613..18876637 (25 bp)
TACCCAGCGCTGTGGTTGACTGGCG
LOC_Os05g32460
OsAffx.23856.2.S1_at--884--4691Chr05:18876607..18876629 (23 bp)
GCTGTGGTTGACTGGCGCGTGGGAG
LOC_Os05g32460
OsAffx.23856.2.S1_at--714--3011Chr05:18876193..18876217 (25 bp)
AATGCTAGTGCTACTGCAACGCGGG
LOC_Os05g32460
OsAffx.23856.2.S1_at--825--4491Chr05:18875894..18875918 (25 bp)
GCCGGGTCGTCATCCGGCGGAAACG
LOC_Os05g32460
Target Sequence 
GACGGTGATAATTTTGACACCCTGTGGGACGTCTACCCAGCGCTGTGGTTGACTGGCGCGTGGGAGGAGGAGGAGGTTGG
GGTGGGGGTGATGGATCGGCAGAGGCAGCAGAGCTCCAGGGGCAATGCTAGTGCTACTGCAACGCGGGGTGGTGGTGGTG
GTGGTGGTGGTAAGGGGGGAGGGAACGGGAAGGCGGCGGCGGCGGGGAAGAAGCCGATCAAGGTGGTGTACATCTCCAAC
CCCATGCGGGTGAGGACCAGCGCCGCCGGGTTCCGCGCCCTCGTGCAGGAGCTCACCGGCCGCAACGCCGACCCTTCCAA
GTACAGCCCCCGCGCCTCCGCGGGCGACGACGGCGGTGGCGCCACGGCGCTGCCCGACACCGGCGCAGCCAGCGACGCCG
ACGCCCTCGAGGCGGGCGCGGCGCCGGGTCGTCATCCGGCGGAAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23856.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis