Browse Element(s) Details


OsAffx.15048.1.S1_at

Description tigr:9633.m03802
TID=OsAffx.15048.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4069010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40650Os.54633.1.S1_at11/115+23756204..23759277cation/hydrogen exchanger, putative, expressed
LOC_Os05g40660Os.38751.1.A1_at5/115+23761324..23766044hypothetical protein
LOC_Os05g40660OsAffx.1198.1.S1_at2/115+23761324..23766044hypothetical protein
LOC_Os05g40660OsAffx.8338.1.S1_x_at1/115+23761324..23766044hypothetical protein
LOC_Os05g40670OsAffx.29607.5.S1_x_at9/115+23766286..23768989transposon protein, putative, unclassified
LOC_Os05g40670OsAffx.29607.3.S1_x_at6/115+23766286..23768989transposon protein, putative, unclassified
LOC_Os05g40670Os.37083.2.S1_at1/115+23766286..23768989transposon protein, putative, unclassified
LOC_Os05g40680OsAffx.29607.1.S1_x_at8/115+23769647..23773964hypothetical protein
LOC_Os05g40680OsAffx.29607.2.S1_s_at5/115+23769647..23773964hypothetical protein
LOC_Os05g40690OsAffx.15048.1.S1_at10/115+23776180..23778569hypothetical protein
LOC_Os05g40690OsAffx.29536.4.S1_x_at2/115+23776180..23778569hypothetical protein
LOC_Os05g40700Os.33019.1.S1_at11/115+23782547..23786320expressed protein
LOC_Os05g40710NANA5+23788310..23789791GRAS family transcription factor containing protein
LOC_Os05g40720OsAffx.15049.1.S1_at10/115+23790971..23795072Glycosyl transferase family 8 protein
LOC_Os05g40720Os.55837.1.S1_x_at1/115+23790971..23795072Glycosyl transferase family 8 protein
LOC_Os05g40730NANA5+23795611..23798327hypothetical protein
LOC_Os05g40740OsAffx.27264.1.S1_s_at11/115+23800217..23802733L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os05g40740OsAffx.27264.1.S1_at11/115+23800217..23802733L-ascorbate oxidase homolog precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15048.1.S1_at--282--271NONE
ATAGTGGAGGCGAGAGTAAAGTCAT
NONE
OsAffx.15048.1.S1_at--112--5511Chr05:23776602..23776626 (25 bp)
GAACACAATATTCTTGCCGGACTCT
LOC_Os05g40690
OsAffx.15048.1.S1_at--768--11Chr05:23776593..23776617 (25 bp)
ATTCTTGCCGGACTCTAAAGTTCAT
LOC_Os05g40690
OsAffx.15048.1.S1_at--1060--4451Chr05:23776587..23776611 (25 bp)
GCCGGACTCTAAAGTTCATTTAGTC
LOC_Os05g40690
OsAffx.15048.1.S1_at--1155--1671Chr05:23776558..23776582 (25 bp)
AGCCATTTGGGATCTCTTGGTTCAT
LOC_Os05g40690
OsAffx.15048.1.S1_at--1029--3751Chr05:23776545..23776569 (25 bp)
CTCTTGGTTCATGGAGATTGGCACT
LOC_Os05g40690
OsAffx.15048.1.S1_at--650--1251Chr05:23776531..23776555 (25 bp)
AGATTGGCACTGGTCAGCTTGCGGC
LOC_Os05g40690
OsAffx.15048.1.S1_at--1014--5091Chr05:23776525..23776549 (25 bp)
GCACTGGTCAGCTTGCGGCGCTAGC
LOC_Os05g40690
OsAffx.15048.1.S1_at--614--3931Chr05:23776510..23776534 (25 bp)
CGGCGCTAGCTGTGTTTGTCTGCAT
LOC_Os05g40690
OsAffx.15048.1.S1_at--233--6871Chr05:23776497..23776521 (25 bp)
GTTTGTCTGCATTTTTGCCTGTGTA
LOC_Os05g40690
OsAffx.15048.1.S1_at--664--4471Chr05:23776481..23776505 (25 bp)
GCCTGTGTAGGCATGGCTGATAGCC
LOC_Os05g40690
Target Sequence 
ATAGTGGAGGCGAGAGTAAAGTCATAGAGAACACAATATTCTTGCCGGACTCTAAAGTTCATTTAGTCAAGAAGCCATTT
GGGATCTCTTGGTTCATGGAGATTGGCACTGGTCAGCTTGCGGCGCTAGCTGTGTTTGTCTGCATTTTTGCCTGTGTAGG
CATGGCTGATAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15048.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis