Browse Element(s) Details


OsAffx.15050.1.S1_at

Description tigr:9633.m03815
TID=OsAffx.15050.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4080011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40770Os.46287.1.S1_a_at11/115+23816223..23822364Protein kinase domain containing protein, expressed
LOC_Os05g40770Os.52122.1.S1_at1/115+23816223..23822364Protein kinase domain containing protein, expressed
LOC_Os05g40780Os.39887.1.S1_at9/115+23824650..23827389expressed protein
LOC_Os05g40790Os.13515.1.S1_at11/115+23833218..23840358NOT2/NOT3/NOT5 family protein, expressed
LOC_Os05g40800OsAffx.15050.1.S1_at11/115+23842764..23845047hypothetical protein
LOC_Os05g40810OsAffx.4581.1.S1_at11/115+23848492..23854653BRCA1 C Terminus domain containing protein
LOC_Os05g40820Os.10406.1.S1_at11/115+23856691..2385992860S ribosomal protein L24, putative, expressed
LOC_Os05g40830OsAffx.27265.1.S1_at11/115+23869826..23870824hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15050.1.S1_at--1081--8191Chr05:23844336..23844483 (25 bp)
GGAAGTGACACTGAGCTCTCCTGCA
LOC_Os05g40800
OsAffx.15050.1.S1_at--658--4971Chr05:23844509..23844533 (25 bp)
GCATCTCCGCGTTCGAGCATGTGTT
LOC_Os05g40800
OsAffx.15050.1.S1_at--590--1531Chr05:23844524..23844548 (25 bp)
AGCATGTGTTGCTCGAGTTCGACCT
LOC_Os05g40800
OsAffx.15050.1.S1_at--518--4691Chr05:23844600..23844624 (25 bp)
GCTGGTCGACGCGTGCAAAGAGTTC
LOC_Os05g40800
OsAffx.15050.1.S1_at--539--1651Chr05:23844646..23844670 (25 bp)
AGCGCCGGCAGATTGCTGAGGTCAC
LOC_Os05g40800
OsAffx.15050.1.S1_at--166--8891Chr05:23844662..23844686 (25 bp)
TGAGGTCACGCATCGAGGGCCCAAT
LOC_Os05g40800
OsAffx.15050.1.S1_at--981--3051Chr05:23844684..23844708 (25 bp)
AATCTGCTCGCTGGACATGGACTAC
LOC_Os05g40800
OsAffx.15050.1.S1_at--213--3731Chr05:23844705..23844729 (25 bp)
CTACATGTTCATCAAGAGCGGCGTC
LOC_Os05g40800
OsAffx.15050.1.S1_at--1140--5891Chr05:23844768..23844792 (25 bp)
GAGCTGCTTCCAGAGCGTGGCTGCC
LOC_Os05g40800
OsAffx.15050.1.S1_at--160--4711Chr05:23844827..23844851 (25 bp)
GCGGCGACGGGATTGTCATCCACGA
LOC_Os05g40800
OsAffx.15050.1.S1_at--510--5911Chr05:23844952..23844976 (25 bp)
GAGCTAACGGTGACGCTCAGCTTCG
LOC_Os05g40800
Target Sequence 
GGAAGTGACACTGAGCTCTCCTGCACTGGAGCTGTCATCTCCACTGCGCGGCATCTCCGCGTTCGAGCATGTGTTGCTCG
AGTTCGACCTGAAGCTGAAGAACACCGCCGGCGACGGCGCCGACGCTGACGCCGACGACGTGCTGGTCGACGCGTGCAAA
GAGTTCGTCGACAGGACGATCACCTGCAGCGCCGGCAGATTGCTGAGGTCACGCATCGAGGGCCCAATCTGCTCGCTGGA
CATGGACTACATGTTCATCAAGAGCGGCGTCGAGGCCGCCGTCGAGGTGTTCCTGGGCGACTCCTGCGCGAGCTGCTTCC
AGAGCGTGGCTGCCGTCTACCGCGCCATCGCCGGCGACGGTGACGGCGGCGGCGACGGGATTGTCATCCACGAGGAGTCC
ATCCCGCTTCCTCCGAAGCTGATGCTGGCCGCCGATACCGCTACTGCTCAGGCCGCCGCGGTGGCGACGGTGGTCGCCGT
GCCGTCGGCCGGCGAGCTAACGGTGACGCTCAGCTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15050.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis