Browse Element(s) Details


OsAffx.15073.1.S1_at

Description tigr:9633.m03980
TID=OsAffx.15073.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4238011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g42370OsAffx.4599.1.S1_at11/115+24707749..24713388retrotransposon protein, putative, unclassified
LOC_Os05g42370OsAffx.15327.1.S1_at1/115+24707749..24713388retrotransposon protein, putative, unclassified
LOC_Os05g42380OsAffx.15073.1.S1_at11/115+24735816..24737732hypothetical protein
LOC_Os05g42390OsAffx.27285.1.S1_at11/115+24749978..24750542hypothetical protein
LOC_Os05g42400OsAffx.15074.1.S1_at11/115+24752215..24752607hypothetical protein
LOC_Os05g42410OsAffx.8589.1.S1_at1/115+24755924..24759716transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15073.1.S1_at--414--4691Chr05:24735864..24735888 (25 bp)
GCGGCACATGTGAACCCGGTGCACA
LOC_Os05g42380
OsAffx.15073.1.S1_at--1149--2151Chr05:24735886..24735910 (25 bp)
ACACCGTCGGTGTGGATGATTGTCT
LOC_Os05g42380
OsAffx.15073.1.S1_at--802--7991Chr05:24735899..24735923 (25 bp)
GGATGATTGTCTTGGCCACGAGCGC
LOC_Os05g42380
OsAffx.15073.1.S1_at--26--1871Chr05:24735916..24735940 (25 bp)
ACGAGCGCCGGTGTTGGGCCGTGAG
LOC_Os05g42380
OsAffx.15073.1.S1_at--697--5011Chr05:24736007..24736031 (25 bp)
GCAGTGGGTTCAGGTGGCACCTAAC
LOC_Os05g42380
OsAffx.15073.1.S1_at--1111--9631Chr05:24736016..24736040 (25 bp)
TCAGGTGGCACCTAACTTGGCGGGA
LOC_Os05g42380
OsAffx.15073.1.S1_at--2--8511Chr05:24736021..24736045 (25 bp)
TGGCACCTAACTTGGCGGGATTCGT
LOC_Os05g42380
OsAffx.15073.1.S1_at--423--111Chr05:24736040..24736064 (25 bp)
ATTCGTGGCGACGAGTGGTCTTGTC
LOC_Os05g42380
OsAffx.15073.1.S1_at--57--6131Chr05:24736052..24736076 (25 bp)
GAGTGGTCTTGTCCTTCCATCAATG
LOC_Os05g42380
OsAffx.15073.1.S1_at--476--10811Chr05:24736060..24736084 (25 bp)
TTGTCCTTCCATCAATGCGGTCCGG
LOC_Os05g42380
OsAffx.15073.1.S1_at--162--4271Chr05:24736081..24736188 (24 bp)
CCGGCGAAACGACGGATGTGACATT
LOC_Os05g42380
Target Sequence 
GCGGCACATGTGAACCCGGTGCACACCGTCGGTGTGGATGATTGTCTTGGCCACGAGCGCCGGTGTTGGGCCGTGAGGCG
CAGTGACGAGGGCGCGGACGCCGGAGCAGTGGCGCGGGGCCTATGCGGGCGTGGTGGTGTGCGGCAGTGGGTTCAGGTGG
CACCTAACTTGGCGGGATTCGTGGCGACGAGTGGTCTTGTCCTTCCATCAATGCGGTCCGGCGAAACGACGGATGTGACA
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis