Browse Element(s) Details


OsAffx.4599.1.S1_at

Description tigr:9633.m03979
TID=OsAffx.4599.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4237011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g42330Os.12338.1.S1_at11/115+24678949..24684544secretory carrier membrane protein family protein, putative, expressed
LOC_Os05g42340NANA5+24691505..24692419hypothetical protein
LOC_Os05g42350Os.8150.1.S1_at11/115+24694152..24698833Sulfite reductase, putative, expressed
LOC_Os05g42350Os.8150.1.S1_a_at10/115+24694152..24698833Sulfite reductase, putative, expressed
LOC_Os05g42350Os.8150.2.S1_x_at10/115+24694152..24698833Sulfite reductase, putative, expressed
LOC_Os05g42360OsAffx.4598.1.S1_at10/115+24700443..24702099expressed protein
LOC_Os05g42370OsAffx.4599.1.S1_at11/115+24707749..24713388retrotransposon protein, putative, unclassified
LOC_Os05g42370OsAffx.15327.1.S1_at1/115+24707749..24713388retrotransposon protein, putative, unclassified
LOC_Os05g42380OsAffx.15073.1.S1_at11/115+24735816..24737732hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4599.1.S1_at--109--7991Chr05:24708954..24708978 (25 bp)
GGAGTAAGGATCTCGTTCTTTGGGA
LOC_Os05g42370
OsAffx.4599.1.S1_at--36--9731Chr05:24709006..24709030 (25 bp)
TCAAGAGTTGGAGCTGCCTCTCAGT
LOC_Os05g42370
OsAffx.4599.1.S1_at--308--3471Chr05:24709027..24709051 (25 bp)
CAGTGGTCAGTTCACCCTGAGAGGA
LOC_Os05g42370
OsAffx.4599.1.S1_at--192--2291Chr05:24709065..24709089 (25 bp)
AAATGATCTCAACTGATGACTCCCA
LOC_Os05g42370
OsAffx.4599.1.S1_at--697--5971Chr05:24709091..24709115 (25 bp)
GAGAAATGTGACATCCCTACCTTGT
LOC_Os05g42370
OsAffx.4599.1.S1_at--112--7731Chr05:24713080..24713104 (25 bp)
GGGTGGAATGTCTTGCCCAGAGATT
LOC_Os05g42370
OsAffx.4599.1.S1_at--888--10371Chr05:24713148..24713172 (25 bp)
TTTTCATGCATTTCTGACTCTCCTA
LOC_Os05g42370
OsAffx.4599.1.S1_at--640--3711Chr05:24713170..24713194 (25 bp)
CTAGCTGCTATTTGCCGGGTTTTAT
LOC_Os05g42370
OsAffx.4599.1.S1_at--794--31Chr05:24713229..24713253 (25 bp)
ATTGGTGTACTCTCCTCTGATGCTG
LOC_Os05g42370
OsAffx.4599.1.S1_at--607--9471Chr05:24713244..24713268 (25 bp)
TCTGATGCTGGCTTTCCAAATCAAT
LOC_Os05g42370
OsAffx.4599.1.S1_at--444--6631Chr05:24713311..24713335 (25 bp)
GTTGGGATCGACAAGTTCTCTGGAA
LOC_Os05g42370
Target Sequence 
GGAGTAAGGATCTCGTTCTTTGGGAGGGTGAACCAGAGGAAGTGCAAGAATCTCAAGAGTTGGAGCTGCCTCTCAGTGGT
CAGTTCACCCTGAGAGGAGGAGATGAGGAAAAAATGATCTCAACTGATGACTCCCAAGAGAAATGTGACATCCCTACCTT
GTCAGATATTGAGAGGTTGAGGGAGGAAGAAGAGTTTGAAGAAGAAGACTCTTTCAAAGAAGTGTCATACAAGAAGAGAC
CCAAGAAAAGGGGGAACCGGGACGCTTTCGGGTGGAATGTCTTGCCCAGAGATTTTGAAGAGTTTTTTCTACTTAGTAGC
TCTATGAATGCTGATGATTTTCATGCATTTCTGACTCTCCTAGCTGCTATTTGCCGGGTTTTATGGATTACTAGAAACAA
CATGATTTTTAGAGGGAAATTGGTGTACTCTCCTCTGATGCTGGCTTTCCAAATCAATTTTTTCTTGCAGCAATGGAAAG
ATTTGAGCAGTAAAGTTGCTGTTGGGATCGACAAGTTCTCTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4599.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis