Browse Element(s) Details


Os.12338.1.S1_at

Description gb:AK068335.1
DB_XREF= gi:32978353
TID=Os.12338.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12338 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-022-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149D04, full insert sequence.
FL= gb:AK068335.1 gb:AK104049.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4233011/11secretory carrier membrane protein family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g42290OsAffx.15072.1.S1_at10/115+24652314..24654557Protein ULTRAPETALA2, putative
LOC_Os05g42300Os.48269.1.S1_at11/115+24655369..24659272NAF1 domain containing protein, expressed
LOC_Os05g42310NANA5+24661942..24665233retrotransposon protein, putative, unclassified
LOC_Os05g42320NANA5+24665861..24672016retrotransposon protein, putative, unclassified
LOC_Os05g42330Os.12338.1.S1_at11/115+24678949..24684544secretory carrier membrane protein family protein, putative, expressed
LOC_Os05g42340NANA5+24691505..24692419hypothetical protein
LOC_Os05g42350Os.8150.1.S1_at11/115+24694152..24698833Sulfite reductase, putative, expressed
LOC_Os05g42350Os.8150.1.S1_a_at10/115+24694152..24698833Sulfite reductase, putative, expressed
LOC_Os05g42350Os.8150.2.S1_x_at10/115+24694152..24698833Sulfite reductase, putative, expressed
LOC_Os05g42360OsAffx.4598.1.S1_at10/115+24700443..24702099expressed protein
LOC_Os05g42370OsAffx.4599.1.S1_at11/115+24707749..24713388retrotransposon protein, putative, unclassified
LOC_Os05g42370OsAffx.15327.1.S1_at1/115+24707749..24713388retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0045045biological_processsecretory pathway
GO:0005739cellular_componentmitochondrion
GO:0005386molecular_functioncarrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12338.1.S1_at--798--8691Chr05:24679861..24679885 (25 bp)
TGTCGGGTTTGGATTATTCTGCCTT
LOC_Os05g42330
Os.12338.1.S1_at--17--10231Chr05:24679847..24679871 (25 bp)
TATTCTGCCTTGAGTCACTGCTGAG
LOC_Os05g42330
Os.12338.1.S1_at--819--9471Chr05:24679360..24679384 (25 bp)
TCTGAGCTCCGCATTCTGATGAAAC
LOC_Os05g42330
Os.12338.1.S1_at--31--6071Chr05:24679280..24679304 (25 bp)
GAGTTGCCAATCTAGCATTCGCATA
LOC_Os05g42330
Os.12338.1.S1_at--979--91Chr05:24679264..24679288 (25 bp)
ATTCGCATAGTGTACATCCCTGACG
LOC_Os05g42330
Os.12338.1.S1_at--239--1511Chr05:24679207..24679231 (25 bp)
AGCACCCAGCCATTATTATCTTTTT
LOC_Os05g42330
Os.12338.1.S1_at--926--831Chr05:24679149..24679173 (25 bp)
ATGGACGCGTTCAGGTGTTTGTTTC
LOC_Os05g42330
Os.12338.1.S1_at--72--3111Chr05:24679080..24679104 (25 bp)
AATAGACATACATACGCGTGCGCGA
LOC_Os05g42330
Os.12338.1.S1_at--856--4611Chr05:24679059..24679083 (25 bp)
GCGAGTGGGATCACCTGTTTTTTAT
LOC_Os05g42330
Os.12338.1.S1_at--787--10351Chr05:24679040..24679064 (25 bp)
TTTTATTACTTCCTTTGCAGCATAG
LOC_Os05g42330
Os.12338.1.S1_at--243--1511Chr05:24679011..24679035 (25 bp)
AGCACGTTGTGTTTATCTGTTGACA
LOC_Os05g42330
Target Sequence 
TGTCGGGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCATTGGTGTCATTCAGCAAGTATACATGTACTTCCGTGGAA
GTGGAAAAGCCGCAGAGATGAAACGTGAGGCGGCACGTGGTGCTCTGAGCTCCGCATTCTGATGAAACATGCCTTGAGCA
AAACTGTAGCCAGATGATATGAGTGGGAGGAAACACGAAACATGAGTTGCCAATCTAGCATTCGCATAGTGTACATCCCT
GACGGCTGAACAGCGTGCGGATTTGGAATCACCGAAAGCACCCAGCCATTATTATCTTTTTTGCTCTTCTGTAATATATA
AGCAGCGTTCTTGTATGGACGCGTTCAGGTGTTTGTTTCCATTTGTTGACAAAGATTTTAGATGTGGACGTGTGTTGATA
GGGAATAGACATACATACGCGTGCGCGAGTGGGATCACCTGTTTTTTATTACTTCCTTTGCAGCATAGTTGCAGCACGTT
GTGTTTATCTGTTGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12338.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis