Browse Element(s) Details


OsAffx.15072.1.S1_at

Description tigr:9633.m03971
TID=OsAffx.15072.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4229010/11Protein ULTRAPETALA2, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g42250OsAffx.23819.2.S1_x_at11/115+24628899..24633405cation channel family protein, expressed
LOC_Os05g42250Os.30886.3.S1_x_at3/115+24628899..24633405cation channel family protein, expressed
LOC_Os05g42250OsAffx.24019.1.S1_at1/115+24628899..24633405cation channel family protein, expressed
LOC_Os05g42260OsAffx.15071.1.S1_at11/115+24637663..24638412hypothetical protein
LOC_Os05g42260Os.53296.1.S1_at1/115+24637663..24638412hypothetical protein
LOC_Os05g42270Os.51973.1.S1_at11/115+24641118..24644053Acyltransferase family protein, expressed
LOC_Os05g42280Os.51003.1.S1_at10/115+24646272..24649682expressed protein
LOC_Os05g42280Os.11595.1.S2_at1/115+24646272..24649682expressed protein
LOC_Os05g42290OsAffx.15072.1.S1_at10/115+24652314..24654557Protein ULTRAPETALA2, putative
LOC_Os05g42300Os.48269.1.S1_at11/115+24655369..24659272NAF1 domain containing protein, expressed
LOC_Os05g42310NANA5+24661942..24665233retrotransposon protein, putative, unclassified
LOC_Os05g42320NANA5+24665861..24672016retrotransposon protein, putative, unclassified
LOC_Os05g42330Os.12338.1.S1_at11/115+24678949..24684544secretory carrier membrane protein family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010022biological_processmeristem determinacy
GO:0010080biological_processregulation of floral meristem size
GO:0010081biological_processregulation of inflorescence meristem size
GO:0005634cellular_componentnucleus
GO:0005829cellular_componentcytosol
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15072.1.S1_at--678--2891Chr05:24653143..24653167 (25 bp)
AAGGTGGCGCTCTCCAAGACCTGCC
LOC_Os05g42290
OsAffx.15072.1.S1_at--132--9191Chr05:24653164..24653188 (25 bp)
TGCCTGCTCAGGTACTACCACAAGA
LOC_Os05g42290
OsAffx.15072.1.S1_at--881--5731Chr05:24653341..24653365 (25 bp)
GACTGGACCTGCAAGGACATGCCCC
LOC_Os05g42290
OsAffx.15072.1.S1_at--848--5971Chr05:24653842..24653865 (24 bp)
GAGAACTTGGGTACTTGGTCGTCAA
LOC_Os05g42290
OsAffx.15072.1.S1_at--286--3611Chr05:24653854..24653878 (25 bp)
CTTGGTCGTCAATGGCATAGCATGA
LOC_Os05g42290
OsAffx.15072.1.S1_at--257--4991Chr05:24653873..24653897 (25 bp)
GCATGAACGTGGAAGCTGTCGCGTC
LOC_Os05g42290
OsAffx.15072.1.S1_at--249--2691Chr05:24653885..24653909 (25 bp)
AAGCTGTCGCGTCGGCATTATGTAC
LOC_Os05g42290
OsAffx.15072.1.S1_at--713--151Chr05:24653901..24653925 (25 bp)
ATTATGTACGTTCACATGCGCCGCA
LOC_Os05g42290
OsAffx.15072.1.S1_at--285--611Chr05:24653916..24653940 (25 bp)
ATGCGCCGCAGATAGAGATGGCTTT
LOC_Os05g42290
OsAffx.15072.1.S1_at--1109--10031Chr05:24653928..24653952 (25 bp)
TAGAGATGGCTTTGACGTGAGGACC
LOC_Os05g42290
OsAffx.15072.1.S1_at--167--1131NONE
AGTGCAGACGTATAGAGGCTCTCTA
NONE
Target Sequence 
AAGGTGGCGCTCTCCAAGACCTGCCTGCTCAGGTACTACCACAAGAAGCTCAAGTCGTCGTCGGCCAACGGCGGCGGCCG
CCGGCCGCCGTGCCACCGCGACGAGTTCGTCCGGTGCGCCGGCTGCGGCAAGGAGAGGCGGTTCCGGCTCAGGACCAAGG
AGGAGTGCCGCCTCTACCACGACGCCATGGCGCGCCATGACTGGACCTGCAAGGACATGCCCCCCGCTGGCAGGTGCAGG
GTGAGAGTGAGCTGCGAGGAGGAGGAGGAGAGGGCGAGCAGGAAGGCGTCGAGGGGGTGCACGCGGGCGGCGACGTGCAA
GGGGTGCGTGAGAACTTGGGTACTTGGTCGTCAATGGCATAGCATGAACGTGGAAGCTGTCGCGTCGGCATTATGTACGT
TCACATGCGCCGCAGATAGAGATGGCTTTGACGTGAGGACCGTGGTGTGCAGTGTGCAGACAGTGCAGACGTATAGAGGC
TCTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis