Browse Element(s) Details


OsAffx.15071.1.S1_at

Description tigr:9633.m03968
TID=OsAffx.15071.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4226011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g42230Os.11180.1.S1_at11/115+24612998..24616146universal stress protein family protein, expressed
LOC_Os05g42240OsAffx.4596.1.S1_at11/115+24619173..24620423hypothetical protein
LOC_Os05g42240OsAffx.4596.1.S1_x_at11/115+24619173..24620423hypothetical protein
LOC_Os05g42250OsAffx.23819.2.S1_x_at11/115+24628899..24633405cation channel family protein, expressed
LOC_Os05g42250Os.30886.3.S1_x_at3/115+24628899..24633405cation channel family protein, expressed
LOC_Os05g42250OsAffx.24019.1.S1_at1/115+24628899..24633405cation channel family protein, expressed
LOC_Os05g42260OsAffx.15071.1.S1_at11/115+24637663..24638412hypothetical protein
LOC_Os05g42260Os.53296.1.S1_at1/115+24637663..24638412hypothetical protein
LOC_Os05g42270Os.51973.1.S1_at11/115+24641118..24644053Acyltransferase family protein, expressed
LOC_Os05g42280Os.51003.1.S1_at10/115+24646272..24649682expressed protein
LOC_Os05g42280Os.11595.1.S2_at1/115+24646272..24649682expressed protein
LOC_Os05g42290OsAffx.15072.1.S1_at10/115+24652314..24654557Protein ULTRAPETALA2, putative
LOC_Os05g42300Os.48269.1.S1_at11/115+24655369..24659272NAF1 domain containing protein, expressed
LOC_Os05g42310NANA5+24661942..24665233retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15071.1.S1_at--286--1191Chr05:24638354..24638378 (25 bp)
AGTATTCTACAACACCTAAGGATGG
LOC_Os05g42260
OsAffx.15071.1.S1_at--536--3271Chr05:24638345..24638369 (25 bp)
CAACACCTAAGGATGGAAGAGATAA
LOC_Os05g42260
OsAffx.15071.1.S1_at--965--6011Chr05:24638327..24638351 (25 bp)
GAGATAAAATCCAATTTTACGCCCT
LOC_Os05g42260
OsAffx.15071.1.S1_at--511--10431Chr05:24638294..24638318 (25 bp)
TTATCCCACTAAGACATCAGCAAAT
LOC_Os05g42260
OsAffx.15071.1.S1_at--704--1491Chr05:24638016..24638300 (25 bp)
AGCAAATCTGCTGTGTTCATCTTGA
LOC_Os05g42260
OsAffx.15071.1.S1_at--1006--3291Chr05:24638014..24638298 (25 bp)
CAAATCTGCTGTGTTCATCTTGATA
LOC_Os05g42260
OsAffx.15071.1.S1_at--859--6511Chr05:24637993..24638017 (25 bp)
GATATTGAATCTATTACTGACCCTT
LOC_Os05g42260
OsAffx.15071.1.S1_at--508--5251Chr05:24637987..24638011 (25 bp)
GAATCTATTACTGACCCTTTATGGT
LOC_Os05g42260
OsAffx.15071.1.S1_at--553--1971Chr05:24637978..24638002 (25 bp)
ACTGACCCTTTATGGTCTGACTCAA
LOC_Os05g42260
OsAffx.15071.1.S1_at--559--7171Chr05:24637964..24637988 (25 bp)
GTCTGACTCAAAAGTATGGAACCCA
LOC_Os05g42260
OsAffx.15071.1.S1_at--822--1191Chr05:24637957..24637976 (20 bp)
AGTATGGAACCCATTCTCAGATAAT
LOC_Os05g42260
Target Sequence 
AGTATTCTACAACACCTAAGGATGGAAGAGATAAAATCCAATTTTACGCCCTCCTCCCCCTTATCCCACTAAGACATCAG
CAAATCTGCTGTGTTCATCTTGATATTGAATCTATTACTGACCCTTTATGGTCTGACTCAAAAGTATGGAACCCATTCTC
AGATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15071.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis