Browse Element(s) Details


Os.48269.1.S1_at

Description gb:AK065486.1
DB_XREF= gi:32975504
TID=Os.48269.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48269 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013020M22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013020M22, full insert sequence.
FL= gb:AK064242.1 gb:AK065486.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4230011/11NAF1 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g42250OsAffx.23819.2.S1_x_at11/115+24628899..24633405cation channel family protein, expressed
LOC_Os05g42250Os.30886.3.S1_x_at3/115+24628899..24633405cation channel family protein, expressed
LOC_Os05g42250OsAffx.24019.1.S1_at1/115+24628899..24633405cation channel family protein, expressed
LOC_Os05g42260OsAffx.15071.1.S1_at11/115+24637663..24638412hypothetical protein
LOC_Os05g42260Os.53296.1.S1_at1/115+24637663..24638412hypothetical protein
LOC_Os05g42270Os.51973.1.S1_at11/115+24641118..24644053Acyltransferase family protein, expressed
LOC_Os05g42280Os.51003.1.S1_at10/115+24646272..24649682expressed protein
LOC_Os05g42280Os.11595.1.S2_at1/115+24646272..24649682expressed protein
LOC_Os05g42290OsAffx.15072.1.S1_at10/115+24652314..24654557Protein ULTRAPETALA2, putative
LOC_Os05g42300Os.48269.1.S1_at11/115+24655369..24659272NAF1 domain containing protein, expressed
LOC_Os05g42310NANA5+24661942..24665233retrotransposon protein, putative, unclassified
LOC_Os05g42320NANA5+24665861..24672016retrotransposon protein, putative, unclassified
LOC_Os05g42330Os.12338.1.S1_at11/115+24678949..24684544secretory carrier membrane protein family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48269.1.S1_at--8--2011Chr05:24655902..24655926 (25 bp)
ACTCGCTGAGTGAACTCCTCTTGAA
LOC_Os05g42300
Os.48269.1.S1_at--1098--8971Chr05:24655797..24655821 (25 bp)
TGAACTTCACTTTGGACACCCTTGT
LOC_Os05g42300
Os.48269.1.S1_at--885--8751Chr05:24655761..24655785 (25 bp)
TGTTTCACAATATACCCCGGTTTAG
LOC_Os05g42300
Os.48269.1.S1_at--100--31Chr05:24655699..24655723 (25 bp)
ATTGGACTGGGTTTGCTGTGTCACT
LOC_Os05g42300
Os.48269.1.S1_at--435--3891Chr05:24655684..24655708 (25 bp)
CTGTGTCACTTTGTTGGTTTCCATC
LOC_Os05g42300
Os.48269.1.S1_at--599--10771Chr05:24655651..24655675 (25 bp)
TTGGGCGCATCCACGCGAGTAATTT
LOC_Os05g42300
Os.48269.1.S1_at--638--6091Chr05:24655635..24655659 (25 bp)
GAGTAATTTCTGTGCGCGCTGAAGT
LOC_Os05g42300
Os.48269.1.S1_at--713--2331Chr05:24655614..24655638 (25 bp)
AAGTGCCCGGGTGAACTAGCTTCAT
LOC_Os05g42300
Os.48269.1.S1_at--749--10051Chr05:24655566..24655590 (25 bp)
TAGTATGTGATGTCCATGTCCTCCA
LOC_Os05g42300
Os.48269.1.S1_at--1007--3531Chr05:24655534..24655558 (25 bp)
CATCCGGTTCCAATGTTGTTTGTCA
LOC_Os05g42300
Os.48269.1.S1_at--680--6111Chr05:24655459..24655483 (25 bp)
GAGTGACTGTCTTGAGTTCCAGATA
LOC_Os05g42300
Target Sequence 
ACTCGCTGAGTGAACTCCTCTTGAATGGTTCAGTCTTTGCTTTGATGTATTCGTAAACGGAGACATGATCAGTTGCATGT
AATATTCAATTTGTTTCGTTTACGGTGAACTTCACTTTGGACACCCTTGTGTGTTTGCCTATGTTTCACAATATACCCCG
GTTTAGTGAAGCCTTCAAATTAATGTNTGACCAGACTTTGCAAATTGGACTGGGTTTGCTGTGTCACTTTGTTGGTTTCC
ATCGTGGNCTGTTGGGCGCATCCACGCGAGTAATTTCTGTGCGCGCTGAAGTGCCCGGGTGAACTAGCTTCATTCACTTA
CAGAGCACTGAAGTNGTAGTATGTGATGTCCATGTCCTCCATACAGTACATCCGGTTCCAATGTTGTTTGTCAAACACTG
AAACATAACTGGATTTTGTATGAACCATGATTCTGATATATGAGAGTGACTGTCTTGAGTTCCAGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48269.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis