Browse Element(s) Details


Os.53296.1.S1_at

Description gb:AK071864.1
DB_XREF= gi:32981887
TID=Os.53296.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.53296 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023124B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023124B03, full insert sequence.
FL= gb:AK071864.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0992011/11Cytochrome P450 family protein, expressed
LOC_Os05g422601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09870NANA4+5287292..5289085hypothetical protein
LOC_Os04g09880OsAffx.3759.1.S1_at11/114+5291443..5292815hypothetical protein
LOC_Os04g09880OsAffx.23961.1.S1_s_at1/114+5291443..5292815hypothetical protein
LOC_Os04g09880OsAffx.23961.2.S1_s_at1/114+5291443..5292815hypothetical protein
LOC_Os04g09900Os.16233.1.S1_a_at11/114+5298069..5306436Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os04g09910NANA4+5308069..5308886retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09920Os.53296.1.S1_at11/114+5312345..5314485Cytochrome P450 family protein, expressed
LOC_Os04g09930NANA4+5318771..5323090retrotransposon protein, putative, unclassified
LOC_Os04g09940Os.28943.1.S1_x_at1/114+5323736..5327086retrotransposon protein, putative, unclassified
LOC_Os04g09950OsAffx.13741.1.S1_at11/114+5337009..5337800hypothetical protein
LOC_Os04g09960OsAffx.25947.1.S1_at10/114+5338317..5339748hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53296.1.S1_at--355--851Chr04:5312812..5312836 (25 bp)
ATGGCACAGCGGACTTCAAAGGCTC
LOC_Os04g09920
Os.53296.1.S1_at--743--6951Chr04:5312778..5312802 (25 bp)
GTACTTGCCATTTGGGACCGGGAGA
LOC_Os04g09920
Os.53296.1.S1_at--76--8031Chr04:5312752..5312776 (25 bp)
GGAGGTGCCCTGGTGATATATTTGC
LOC_Os04g09920
Os.53296.1.S1_at--725--231Chr04:5312737..5312761 (25 bp)
ATATATTTGCAATGGCCACGCTGGA
LOC_Os04g09920
Os.53296.1.S1_at--271--7991Chr04:5312662..5312686 (25 bp)
GGATGCAGCCAGGTGATATCGACAT
LOC_Os04g09920
Os.53296.1.S1_at--1146--2111Chr04:5312641..5312665 (25 bp)
ACATGGAGCTCGTCGTTGGTGCAAC
LOC_Os04g09920
Os.53296.1.S1_at--389--5251Chr04:5312604..5312628 (25 bp)
GAATCATCTCCAGCTAGTGGCATCA
LOC_Os04g09920
Os.53296.1.S1_at--678--7531Chr04:5312588..5312612 (25 bp)
GTGGCATCACCATATAAGCCGATTT
LOC_Os04g09920
Os.53296.1.S1_at--361--8711Chr04:5312531..5312555 (25 bp)
TGTCGGTGTACTTGCGGTTCGCTTA
LOC_Os04g09920
Os.53296.1.S1_at--976--9931Chr04:5312508..5312532 (25 bp)
TACGTGCTTGCATACCTCTTAATAA
LOC_Os04g09920
Os.53296.1.S1_at--805--3076Chr01:35790421..35790674 (25 bp)
AATACTAGTTGATACCCCGTGCTTT
NONE
Target Sequence 
ATGGCACAGCGGACTTCAAAGGCTCCCGTTTTGAGTACTTGCCATTTGGGACCGGGAGAAGGAGGTGCCCTGGTGATATA
TTTGCAATGGCCACGCTGGAACTCATCGTGGCGCGCCTTCTATACTACTTCGACTGGAGCCTCCCGGATGGGATGCAGCC
AGGTGATATCGACATGGAGCTCGTCGTTGGTGCAACGGCGAGGAGAAAGAATCATCTCCAGCTAGTGGCATCACCATATA
AGCCGATTTCCATGCAAAGTTGATGGATGTGTGTGACTGTGTGTCGGTGTACTTGCGGTTCGCTTACGTGCTTGCATACC
TCTTAATAAGTTTTGTTTGTCCTGGGGAAATGGACAAACAAATTAATAATACTAGTTGATACCCCGTGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53296.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis