Browse Element(s) Details


OsAffx.25947.1.S1_at

Description tigr:9632.m00868
TID=OsAffx.25947.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0996010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09920Os.53296.1.S1_at11/114+5312345..5314485Cytochrome P450 family protein, expressed
LOC_Os04g09930NANA4+5318771..5323090retrotransposon protein, putative, unclassified
LOC_Os04g09940Os.28943.1.S1_x_at1/114+5323736..5327086retrotransposon protein, putative, unclassified
LOC_Os04g09950OsAffx.13741.1.S1_at11/114+5337009..5337800hypothetical protein
LOC_Os04g09960OsAffx.25947.1.S1_at10/114+5338317..5339748hypothetical protein
LOC_Os04g09969NANA4+5344752..5344988NA
LOC_Os04g09980Os.35344.3.S1_x_at11/114+5346825..5352543transposon protein, putative, Mutator sub-class
LOC_Os04g09980Os.35344.18.S1_x_at8/114+5346825..5352543transposon protein, putative, Mutator sub-class
LOC_Os04g09980OsAffx.22940.5.S1_x_at3/114+5346825..5352543transposon protein, putative, Mutator sub-class
LOC_Os04g09990OsAffx.25948.1.S1_at11/114+5357271..5359192hypothetical protein
LOC_Os04g10000NANA4+5360317..5361507oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25947.1.S1_at--1136--7671Chr04:5338390..5338414 (25 bp)
GGGTCATAACCTTGATCACGACGAT
LOC_Os04g09960
OsAffx.25947.1.S1_at--665--8111Chr04:5338454..5338478 (25 bp)
GGACGACATAGCCAACAGCCTGCTG
LOC_Os04g09960
OsAffx.25947.1.S1_at--868--731Chr04:5338507..5338531 (25 bp)
ATGTAAAGCCTTTCAACCTTTCCTG
LOC_Os04g09960
OsAffx.25947.1.S1_at--1134--2611Chr04:5338521..5338545 (25 bp)
AACCTTTCCTGCGAGAAGTACGATG
LOC_Os04g09960
OsAffx.25947.1.S1_at--503--1171Chr04:5338537..5338561 (25 bp)
AGTACGATGGCCACCCAAATACTGA
LOC_Os04g09960
OsAffx.25947.1.S1_at--394--5831Chr04:5338560..5338688 (25 bp)
GACCTGGCGCAGTTGAGAATTTTCA
LOC_Os04g09960
OsAffx.25947.1.S1_at--659--2831Chr04:5338692..5338716 (25 bp)
AAGTAACACTCTTCCAACGTGGATT
LOC_Os04g09960
OsAffx.25947.1.S1_at--880--6011NONE
GAGATTCAGCCTTTTAGTATCCCGT
NONE
OsAffx.25947.1.S1_at--549--10452Chr04:5339594..5339618 (25 bp)
TTAGTATCCCGTATGATCCCTTGAT
LOC_Os04g09960
OsAffx.25947.1.S1_at--151--7231Chr04:5339642..5339666 (25 bp)
GTCGACTTCGATCTATCACTGGCAA
LOC_Os04g09960
OsAffx.25947.1.S1_at--936--1311Chr04:5339675..5339699 (25 bp)
AGAGGCCTCAAGCAACAGTTGCACA
LOC_Os04g09960
Target Sequence 
GGGTCATAACCTTGATCACGACGATCCCTCATCCTCTTCCTCATCTTCTTGGGATGGATCCCAAGGACGACATAGCCAAC
AGCCTGCTGCCCGCCGCCCCCCCTCCCCTGGCGGTGGATGTAAAGCCTTTCAACCTTTCCTGCGAGAAGTACGATGGCCA
CCCAAATACTGACCTGGCGCAGTTGAGAATTTTCAATCAAGTAACACTCTTCCAACGTGGATTAGAGATTCAGCCTTTTA
GTATCCCGTATGATCCCTTGATCCCTGGACGTCTACTTCTCCCAGGTCGACTTCGATCTATCACTGGCAACACTCTCCAG
AGGCCTCAAGCAACAGTTGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25947.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis