Browse Element(s) Details


OsAffx.4596.1.S1_x_at

Description tigr:9633.m03966
TID=OsAffx.4596.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4224011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g42210Os.56528.1.S1_at11/115+24593567..24599401S-locus glycoprotein family protein, expressed
LOC_Os05g42220Os.49510.1.S1_at10/115+24608048..24612274Leucine Rich Repeat family protein, expressed
LOC_Os05g42230Os.11180.1.S1_at11/115+24612998..24616146universal stress protein family protein, expressed
LOC_Os05g42240OsAffx.4596.1.S1_at11/115+24619173..24620423hypothetical protein
LOC_Os05g42240OsAffx.4596.1.S1_x_at11/115+24619173..24620423hypothetical protein
LOC_Os05g42250OsAffx.23819.2.S1_x_at11/115+24628899..24633405cation channel family protein, expressed
LOC_Os05g42250Os.30886.3.S1_x_at3/115+24628899..24633405cation channel family protein, expressed
LOC_Os05g42250OsAffx.24019.1.S1_at1/115+24628899..24633405cation channel family protein, expressed
LOC_Os05g42260OsAffx.15071.1.S1_at11/115+24637663..24638412hypothetical protein
LOC_Os05g42260Os.53296.1.S1_at1/115+24637663..24638412hypothetical protein
LOC_Os05g42270Os.51973.1.S1_at11/115+24641118..24644053Acyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4596.1.S1_x_at--971--4251Chr05:24619847..24619871 (25 bp)
CCGGAGCTGCAATTCTTGAGGGATC
LOC_Os05g42240
OsAffx.4596.1.S1_x_at--100--3191Chr05:24619838..24619862 (25 bp)
CAATTCTTGAGGGATCGGTGCATGG
LOC_Os05g42240
OsAffx.4596.1.S1_x_at--662--7971Chr05:24619827..24619851 (25 bp)
GGATCGGTGCATGGGTGGCTTCGCC
LOC_Os05g42240
OsAffx.4596.1.S1_x_at--785--3411Chr05:24619774..24619798 (25 bp)
CAGAGCACCCTTCAAGCCAAAGCAA
LOC_Os05g42240
OsAffx.4596.1.S1_x_at--500--10511Chr05:24619764..24619788 (25 bp)
TTCAAGCCAAAGCAACACCATCTGG
LOC_Os05g42240
OsAffx.4596.1.S1_x_at--561--2651Chr05:24619761..24619785 (25 bp)
AAGCCAAAGCAACACCATCTGGCGC
LOC_Os05g42240
OsAffx.4596.1.S1_x_at--810--5831Chr05:24619571..24619709 (25 bp)
GACCTCTGCTCCAAGACAATGGTGA
LOC_Os05g42240
OsAffx.4596.1.S1_x_at--816--5591Chr05:24619557..24619581 (25 bp)
GACAATGGTGATGGCCTTGGCGGAG
LOC_Os05g42240
OsAffx.4596.1.S1_x_at--34--891Chr05:24619307..24619481 (25 bp)
ATGGCCACCGCTCGCAAGGAGAAGG
LOC_Os05g42240
OsAffx.4596.1.S1_x_at--391--8871Chr05:24619279..24619303 (25 bp)
TGAGGGAGATCGAGTTCTTCCCGAC
LOC_Os05g42240
OsAffx.4596.1.S1_x_at--407--3351Chr05:24619244..24619268 (25 bp)
CACGCCGACGAGTCGGAGTTCGCCG
LOC_Os05g42240
Target Sequence 
CCGGAGCTGCAATTCTTGAGGGATCGGTGCATGGGTGGCTTCGCCGGCGCCGGCCAGCTGCTGCCGCTCGCGCCAGAGCA
CCCTTCAAGCCAAAGCAACACCATCTGGCGCCCGGCGTCTTCTTCTTCCTCCTCCTCCTGCCTCCCAGCCACCCACCGCT
GCGACCTCTGCTCCAAGACAATGGTGATGGCCTTGGCGGAGAGAGGAGGAGCACGAGGCGCCGCCACCACCACCACCAAC
ACGCCGGACTACTCCATCTACGATCTCGCCGCCGCCATGGCCACCGCTCGCAAGGAGAAGGGGCATGGGGTGTTCTTGGG
TAGGGAGAGGAAGAACGACGAGGCGGCGGCGGCGGCGGAGAAGGAGGTGAGGGAGATCGAGTTCTTCCCGACGAGCACCA
CCCACGCCGACGAGTCGGAGTTCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4596.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis