Browse Element(s) Details


Os.49510.1.S1_at

Description gb:AK100270.1
DB_XREF= gi:32985479
TID=Os.49510.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49510 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023068C13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023068C13, full insert sequence.
FL= gb:AK100270.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4222010/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g42190Os.9320.1.S1_at11/115+24586462..24589916Flavoprotein wrbA, putative, expressed
LOC_Os05g42200OsAffx.27284.1.S1_at11/115+24591502..24592970expressed protein
LOC_Os05g42200OsAffx.27284.1.S1_s_at11/115+24591502..24592970expressed protein
LOC_Os05g42210Os.56528.1.S1_at11/115+24593567..24599401S-locus glycoprotein family protein, expressed
LOC_Os05g42220Os.49510.1.S1_at10/115+24608048..24612274Leucine Rich Repeat family protein, expressed
LOC_Os05g42230Os.11180.1.S1_at11/115+24612998..24616146universal stress protein family protein, expressed
LOC_Os05g42240OsAffx.4596.1.S1_at11/115+24619173..24620423hypothetical protein
LOC_Os05g42240OsAffx.4596.1.S1_x_at11/115+24619173..24620423hypothetical protein
LOC_Os05g42250OsAffx.23819.2.S1_x_at11/115+24628899..24633405cation channel family protein, expressed
LOC_Os05g42250Os.30886.3.S1_x_at3/115+24628899..24633405cation channel family protein, expressed
LOC_Os05g42250OsAffx.24019.1.S1_at1/115+24628899..24633405cation channel family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49510.1.S1_at--633--3851Chr05:24611794..24611818 (25 bp)
CTGAAATCGTCAGGGTGTCACCACC
LOC_Os05g42220
Os.49510.1.S1_at--259--7451Chr05:24611808..24611832 (25 bp)
GTGTCACCACCATGTCAGGGCAGGA
LOC_Os05g42220
Os.49510.1.S1_at--855--1371Chr05:24611873..24611897 (25 bp)
AGAGCCGGAATAATGCGCCTCCTAT
LOC_Os05g42220
Os.49510.1.S1_at--457--1731Chr05:24611905..24611929 (25 bp)
ACCATTCGTGGAGCTGATCGTTCTT
LOC_Os05g42220
Os.49510.1.S1_at--651--6211Chr05:24611943..24611967 (25 bp)
GAGGCTGCCTGGTACAGAGATCTCC
LOC_Os05g42220
Os.49510.1.S1_at--342--1351Chr05:24611958..24611982 (25 bp)
AGAGATCTCCGGTCAGATTTTTCGG
LOC_Os05g42220
Os.49510.1.S1_at--608--91Chr05:24611983..24612007 (25 bp)
ATTCGAAGCGCGGATGACCTATGAA
LOC_Os05g42220
Os.49510.1.S1_at--1039--10571Chr05:24612011..24612035 (25 bp)
TTCTCAATTTTGCTGCATCACCACA
LOC_Os05g42220
Os.49510.1.S1_at--930--9391NONE
TCGTTTCATTTGTGGGTTCGAGAAC
NONE
Os.49510.1.S1_at--705--7531Chr05:24612140..24612164 (25 bp)
GTGGCATGAACTATTTGCTGCATTT
LOC_Os05g42220
Os.49510.1.S1_at--1115--9031Chr05:24612222..24612246 (25 bp)
TGCAGCATGATGATACGTTCTATTC
LOC_Os05g42220
Target Sequence 
CTGAAATCGTCAGGGTGTCACCACCATGTCAGGGCAGGAGCAGCAGCTGCAGCTCATGGCTCGGTGAGGACGTCGAGGCA
GAGCCGGAATAATGCGCCTCCTATGGCTCCCACCATTCGTGGAGCTGATCGTTCTTCAGAGGGAGAGAGGAGGCTGCCTG
GTACAGAGATCTCCGGTCAGATTTTTCGGATTCGAAGCGCGGATGACCTATGAATTTTTCTCAATTTTGCTGCATCACCA
CAAAATTTTCGTTTCATTTGTGGGTTCGAGAACTTTTTATCTTGTTTTGATTCTTTTTTTTTCATTCATGAAATTGTTAG
CATGAATGAAAATAGTAGCCATAGTTGTGGCATGAACTATTTGCTGCATTTTTTTTTTTTTTTGGCAGTGATACGAAAGA
ATTGCTAGATGGTAGTAGTATAATGGAATTTGCAGCATGATGATACGTTCTATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49510.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis