Browse Element(s) Details


Os.56528.1.S1_at

Description gb:AK110116.1
DB_XREF= gi:32995325
TID=Os.56528.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56528 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-161-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-161-B01, full insert sequence.
FL= gb:AK110116.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4221011/11S-locus glycoprotein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g42170NANA5+24575227..24575628transposon protein, putative, unclassified
LOC_Os05g42180OsAffx.27283.3.S1_at11/115+24580707..24582902hypothetical protein
LOC_Os05g42190Os.9320.1.S1_at11/115+24586462..24589916Flavoprotein wrbA, putative, expressed
LOC_Os05g42200OsAffx.27284.1.S1_at11/115+24591502..24592970expressed protein
LOC_Os05g42200OsAffx.27284.1.S1_s_at11/115+24591502..24592970expressed protein
LOC_Os05g42210Os.56528.1.S1_at11/115+24593567..24599401S-locus glycoprotein family protein, expressed
LOC_Os05g42220Os.49510.1.S1_at10/115+24608048..24612274Leucine Rich Repeat family protein, expressed
LOC_Os05g42230Os.11180.1.S1_at11/115+24612998..24616146universal stress protein family protein, expressed
LOC_Os05g42240OsAffx.4596.1.S1_at11/115+24619173..24620423hypothetical protein
LOC_Os05g42240OsAffx.4596.1.S1_x_at11/115+24619173..24620423hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56528.1.S1_at--1161--2471Chr05:24598945..24598969 (25 bp)
AACAGCCTCGATCTCGTCGACAAAA
LOC_Os05g42210
Os.56528.1.S1_at--1042--2171Chr05:24598969..24598993 (25 bp)
ACACTGAACGGCTCATTCAACCAAG
LOC_Os05g42210
Os.56528.1.S1_at--622--9591Chr05:24599104..24599128 (25 bp)
TCATTGCCAGATCCCAGGAAGCCTG
LOC_Os05g42210
Os.56528.1.S1_at--941--911Chr05:24599119..24599143 (25 bp)
AGGAAGCCTGGGTTCGTCGCAAGAA
LOC_Os05g42210
Os.56528.1.S1_at--45--5151Chr05:24599149..24599173 (25 bp)
GCAACGGAGGACACGTCGTCGAGCA
LOC_Os05g42210
Os.56528.1.S1_at--156--1391Chr05:24599173..24599197 (25 bp)
AGACCAGACTGCAGCTTCGTGGACA
LOC_Os05g42210
Os.56528.1.S1_at--585--10611Chr05:24599188..24599212 (25 bp)
TTCGTGGACAGCATGACCATCACCA
LOC_Os05g42210
Os.56528.1.S1_at--937--9431Chr05:24599246..24599270 (25 bp)
TCGGAGCGCGACATTGTACTGAAGA
LOC_Os05g42210
Os.56528.1.S1_at--902--10471Chr05:24599271..24599295 (25 bp)
TTACTAGAACGCCTTTGCCTTTGCA
LOC_Os05g42210
Os.56528.1.S1_at--666--6551Chr05:24599340..24599364 (25 bp)
GATTAACCCTAGCACTGAGTTGCGA
LOC_Os05g42210
Os.56528.1.S1_at--865--8891Chr05:24599355..24599379 (25 bp)
TGAGTTGCGAATTCAATCCCACCCA
LOC_Os05g42210
Target Sequence 
AACAGCCTCGATCTCGTCGACAAAACACTGAACGGCTCATTCAACCAAGAGGAAGTGCTAAAATGCCTNAAAGTGGGGCT
CCTATGTGTCCAGGAGAACCCGGACGACCGTCCTCTCATGTCCCAGGTGCTCCTGATGCTGGCCAGCGCCGATGCCACCT
CATTGCCAGATCCCAGGAAGCCTGGGTTCGTCGCAAGAAGAGCTGCAACGGAGGACACGTCGTCGAGCAGACCAGACTGC
AGCTTCGTGGACAGCATGACCATCACCATGATCGAGGGCAGGTAGGAATATAGGATCGGAGTCGGAGCGCGACATTGTAC
TGAAGATTACTAGAACGCCTTTGCCTTTGCATTTTACTAGGTATTCTGTGTAGAATCATATATAGTCTTGTGATTGATTA
ACCCTAGCACTGAGTTGCGAATTCAATCCCACCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56528.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis