Browse Element(s) Details


OsAffx.15078.1.S1_at

Description tigr:9633.m04013
TID=OsAffx.15078.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4318011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43150OsAffx.25962.1.S1_at11/115+24963176..24968921transposon protein, putative, Mutator sub-class
LOC_Os05g43170Os.28096.1.S1_at11/115+24971502..24975853Calreticulin-3 precursor, putative, expressed
LOC_Os05g43170Os.18169.1.S1_at1/115+24971502..24975853Calreticulin-3 precursor, putative, expressed
LOC_Os05g43174Os.55242.1.S1_x_at11/115+24980177..24980799expressed protein
LOC_Os05g43174Os.51264.1.S1_x_at1/115+24980177..24980799expressed protein
LOC_Os05g43180OsAffx.15078.1.S1_at11/115+24988983..24989775hypothetical protein
LOC_Os05g43190OsAffx.15079.1.S1_at11/115+24994767..24995051hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15078.1.S1_at--1152--4292Chr05:24989532..24989596 (25 bp)
CCTACCATCTACATATGTCTTCACG
LOC_Os05g43180
OsAffx.15078.1.S1_at--314--2091Chr05:24989522..24989586 (25 bp)
ACATATGTCTTCACGCCAGTAGCGG
LOC_Os05g43180
OsAffx.15078.1.S1_at--499--4231Chr05:24989477..24989501 (25 bp)
CCGTACTGGATACGCCCCTGCGGAG
LOC_Os05g43180
OsAffx.15078.1.S1_at--985--8011Chr05:24989424..24989448 (25 bp)
GGAGGTCGTGCAGGCTCCCACCATT
LOC_Os05g43180
OsAffx.15078.1.S1_at--581--3591Chr05:24989403..24989427 (25 bp)
CATTCACAAGGGTATGCCGCATGTT
LOC_Os05g43180
OsAffx.15078.1.S1_at--352--6911Chr05:24989392..24989416 (25 bp)
GTATGCCGCATGTTCACAAGATCGT
LOC_Os05g43180
OsAffx.15078.1.S1_at--503--10511Chr05:24989380..24989404 (25 bp)
TTCACAAGATCGTGCAGACTCCCCT
LOC_Os05g43180
OsAffx.15078.1.S1_at--432--831Chr05:24989284..24989308 (25 bp)
ATGGAGAGCTCGACAGGGTTGACCA
LOC_Os05g43180
OsAffx.15078.1.S1_at--217--6371Chr05:24989249..24989273 (25 bp)
GATCCCAACGGCACGTGCGGCGAGC
LOC_Os05g43180
OsAffx.15078.1.S1_at--108--1931Chr05:24989134..24989158 (25 bp)
ACGGTGGTTGTGATGACCTCGGCAA
LOC_Os05g43180
OsAffx.15078.1.S1_at--1029--9271Chr05:24989104..24989128 (25 bp)
TCCTGGCCTCCTGGGAACGAGAGGA
LOC_Os05g43180
Target Sequence 
CCTACCATCTACATATGTCTTCACGCCAGTAGCGGGGGCTCGAGACCCGCCGCTCCCGTACTGGATACGCCCCTGCGGAG
GCCCCCGTGCTGGATCCGCCCCTACGGAGGAGGTCGTGCAGGCTCCCACCATTCACAAGGGTATGCCGCATGTTCACAAG
ATCGTGCAGACTCCCCTCCACACCAACTGGGGGAAGAAAAAAAGAAAGAAGGAAGAAACGGCAGGACGACGAGGACACGA
AGGAGATGATGGAGAGCTCGACAGGGTTGACCATGGCGTGGAGGATCCCAACGGCACGTGCGGCGAGCAGGTGGAGGGCG
TCGATTGCCGCGGTAGGGTGGGCGCTGGCGGAGAGGAGGGAATGGGCGCGGCGGAGCAGGGATGCGGTGAGGACGACGAC
GGTGGTTGTGATGACCTCGGCAACGGCGTCCTGGCCTCCTGGGAACGAGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15078.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis