Browse Element(s) Details


OsAffx.15087.1.S1_at

Description tigr:9633.m04056
TID=OsAffx.15087.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Serpin (serine protease inhibitor)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4359011/11Serpin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43560Os.17049.1.S1_at11/115+25238156..25247656expressed protein
LOC_Os05g43570Os.21326.1.S1_at11/115+25248678..25256568Protein kinase domain containing protein, expressed
LOC_Os05g43576Os.7615.1.S1_at10/115+25260594..25263053Lipoic acid synthetase, mitochondrial precursor, putative, expressed
LOC_Os05g43582OsAffx.4606.1.S1_x_at11/115+25263615..25266095rRNA methylase family protein, expressed
LOC_Os05g43590OsAffx.15087.1.S1_at11/115+25267428..25268366Serpin family protein
LOC_Os05g43600OsAffx.27293.1.S1_at11/115+25272116..25272558hypothetical protein
LOC_Os05g43610Os.54191.1.S1_at11/115+25274047..25279555BRCA1 C Terminus domain containing protein, expressed
LOC_Os05g43619NANA5+25283734..25284146NA
LOC_Os05g43630Os.52238.1.S1_at6/115+25285221..25286730transposon protein, putative, Pong sub-class
LOC_Os05g43630OsAffx.8898.1.S1_at1/115+25285221..25286730transposon protein, putative, Pong sub-class

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Gene Ontology Classification
GO idTypeName
GO:0004867molecular_functionserine-type endopeptidase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15087.1.S1_at--979--4891Chr05:25267945..25267969 (25 bp)
GCTTCAACGTCCTGCGCATGATGTA
LOC_Os05g43590
OsAffx.15087.1.S1_at--1128--7611Chr05:25267897..25267921 (25 bp)
GGGACAAGATGTTCGCGATGTACAT
LOC_Os05g43590
OsAffx.15087.1.S1_at--962--10651Chr05:25267805..25267829 (25 bp)
TTCCTGCGCAGGACGATCGTGCCGG
LOC_Os05g43590
OsAffx.15087.1.S1_at--82--1691Chr05:25267777..25267801 (25 bp)
AGCCTGTTGCGGTCGGCGAGCTCAA
LOC_Os05g43590
OsAffx.15087.1.S1_at--890--4831Chr05:25267758..25267782 (25 bp)
GCTCAAGATCCCCAAATTCGAGGTG
LOC_Os05g43590
OsAffx.15087.1.S1_at--369--4371Chr05:25267747..25267771 (25 bp)
CCAAATTCGAGGTGTCGCTCAAGGT
LOC_Os05g43590
OsAffx.15087.1.S1_at--423--3212Chr07:6447509..6447983 (25 bp)
CAAGGTGGAGGCGTCGCGTCTCCTC
NONE
OsAffx.15087.1.S1_at--1063--7591Chr05:25267702..25267726 (25 bp)
GGGAATTCGGCCTCGACCTGCCATT
LOC_Os05g43590
OsAffx.15087.1.S1_at--12--9231Chr05:25267603..25267627 (25 bp)
TCCACCAGTGCTTCGTCAATGTGAA
LOC_Os05g43590
OsAffx.15087.1.S1_at--339--9331Chr05:25267528..25267552 (25 bp)
TCGCCATGCCGGACGATCAAATCGT
LOC_Os05g43590
OsAffx.15087.1.S1_at--859--2271Chr05:25267510..25267534 (25 bp)
AAATCGTCGATTTCGTCGCCGATCA
LOC_Os05g43590
Target Sequence 
GCTTCAACGTCCTGCGCATGATGTACCGCACGGGCGGCGCCGCCGGCGGGGACAAGATGTTCGCGATGTACATCTACCTC
CCCGACGACCGCGACGGCCTCCCGGAGCTCGCGCGCAAGCTCGCCTCCAACCCGGCCGCGTTCCTGCGCAGGACGATCGT
GCCGGCGCAGCCTGTTGCGGTCGGCGAGCTCAAGATCCCCAAATTCGAGGTGTCGCTCAAGGTGGAGGCGTCGCGTCTCC
TCCGGGAATTCGGCCTCGACCTGCCATTCCTCCCCGCCGCCGACAACTCGTTCTCGGGGATGCTGCTGGACCCGCCTCAG
GGGACAGCCGTCTCGTCCCTTCTCCACCAGTGCTTCGTCAATGTGAATGAGGAAGGGACCGTGGCTGCTGCGGGCACCGT
CGGGGAGATCATGGGCTTCGCCATGCCGGACGATCAAATCGTCGATTTCGTCGCCGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15087.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis