Browse Element(s) Details


OsAffx.15378.1.S1_at

Description tigr:9634.m01164
TID=OsAffx.15378.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1190011/11hypothetical protein
LOC_Os02g181101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11870NANA6+6308926..6309282hypothetical protein
LOC_Os06g11880NANA6+6315295..6318626transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g11890Os.47463.1.S1_x_at4/116+6321150..6324870transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g11890Os.14491.2.S1_x_at4/116+6321150..6324870transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g11900OsAffx.15378.1.S1_at11/116+6332935..6333979hypothetical protein
LOC_Os06g11910Os.54099.1.S1_at11/116+6343014..6346602expressed protein
LOC_Os06g11920Os.5679.1.S1_at11/116+6348121..6351937Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os06g11930OsAffx.4805.1.S1_at11/116+6354146..6354982SNARE domain containing protein
LOC_Os06g11940OsAffx.27574.1.S1_at11/116+6357047..6357856AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15378.1.S1_at--573--7172Chr02:10519534..10519558 (25 bp)
GTCTGCGATGGAAACGATGCCGTGC
LOC_Os02g18110
OsAffx.15378.1.S1_at--734--3692Chr06:6333727..6333751 (25 bp)
CTAGGGTTTGGTGCAAGCCGGCCAA
LOC_Os06g11900
OsAffx.15378.1.S1_at--351--6531Chr06:6333254..6333699 (25 bp)
GATTTCACGGATTGAGTCGGCAGTT
LOC_Os06g11900
OsAffx.15378.1.S1_at--877--6091Chr06:6333241..6333265 (25 bp)
GAGTCGGCAGTTCAATTACATTGAC
LOC_Os06g11900
OsAffx.15378.1.S1_at--122--51Chr06:6333150..6333174 (25 bp)
ATTGTCACGTTGCTCCCTATTGAGA
LOC_Os06g11900
OsAffx.15378.1.S1_at--1074--631Chr06:6333111..6333135 (25 bp)
ATGAGGTTTGTGCTCGGACTTCTCT
LOC_Os06g11900
OsAffx.15378.1.S1_at--219--4091Chr06:6333082..6333106 (25 bp)
CGACATGATCCTGCATGCTGGCATG
LOC_Os06g11900
OsAffx.15378.1.S1_at--104--9131Chr06:6333067..6333091 (25 bp)
TGCTGGCATGTACCGAGACACGCTG
LOC_Os06g11900
OsAffx.15378.1.S1_at--457--4951Chr06:6332999..6333023 (25 bp)
GCAACTTTGTGGAAACGCCCTACGA
LOC_Os06g11900
OsAffx.15378.1.S1_at--354--8511Chr06:6332990..6333014 (25 bp)
TGGAAACGCCCTACGACGTGGACTG
LOC_Os06g11900
OsAffx.15378.1.S1_at--1007--5711Chr06:6332970..6332994 (25 bp)
GACTGCATGGAACGGATGCCCACGA
LOC_Os06g11900
Target Sequence 
GTCTGCGATGGAAACGATGCCGTGCGAGTGGAGGAGGACGGCGAGGAGAGGCGAGGCAACGCGCATGAGGGCAGGAGAAC
GGCGAGGCGGCGGCGGCTACGGCGCATGCGAGGGGAGGAGCCGAGGAGGAGAGCGTGGCGGCGCGCAGAGGGAGGAGGGC
GAGTGCGCGTGCGAGGGTGGGGGGCGACGGGGCTAGGGTTTGGTGCAAGCCGGCCAAATCCACACCGTCCGTTCCGGATC
CAACGATTTCACGGATTGAGTCGGCAGTTCAATTACATTGACGGCAGCCACCACGACACATGGGGAGTCGTGCTCTTGGA
CATGGAGCAGAGGGTCCTCAAGGAGGAGATTGTCACGTTGCTCCCTATTGAGAGGGGCATCGCCATGATGAGGTTTGTGC
TCGGACTTCTCTGCACCGACATGATCCTGCATGCTGGCATGTACCGAGACACGCTGGAGAAGGAGGCAACGCATGAGGAC
CTTCTGATCCCCAACACCGGCAACTTTGTGGAAACGCCCTACGACGTGGACTGCATGGAACGGATGCCCACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15378.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis