Browse Element(s) Details


OsAffx.27574.1.S1_at

Description tigr:9634.m01168
TID=OsAffx.27574.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AP2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1194011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11900OsAffx.15378.1.S1_at11/116+6332935..6333979hypothetical protein
LOC_Os06g11910Os.54099.1.S1_at11/116+6343014..6346602expressed protein
LOC_Os06g11920Os.5679.1.S1_at11/116+6348121..6351937Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os06g11930OsAffx.4805.1.S1_at11/116+6354146..6354982SNARE domain containing protein
LOC_Os06g11940OsAffx.27574.1.S1_at11/116+6357047..6357856AP2 domain containing protein, expressed
LOC_Os06g11950NANA6+6360090..6361250Zinc knuckle family protein
LOC_Os06g11960Os.16735.1.S1_at1/116+6368183..63696952,3-bisphosphoglycerate-dependent phosphoglycerate mutase, putative
LOC_Os06g11970Os.49822.1.S1_at11/116+6371354..6375375SRF-type transcription factor family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27574.1.S1_at--37--1251Chr06:6357475..6357499 (25 bp)
AGTTGTCGCGCGCACTAGAGATCTG
LOC_Os06g11940
OsAffx.27574.1.S1_at--372--3331Chr06:6357487..6357511 (25 bp)
CACTAGAGATCTGCGCGAGGTGTAT
LOC_Os06g11940
OsAffx.27574.1.S1_at--1081--10631Chr06:6357515..6357539 (25 bp)
TTCGCGGTCTCGCATGCCAACAGGC
LOC_Os06g11940
OsAffx.27574.1.S1_at--1135--8531Chr06:6357553..6357577 (25 bp)
TGGAGAAACGGCTGCCACGGCTCTG
LOC_Os06g11940
OsAffx.27574.1.S1_at--279--8551Chr06:6357594..6357618 (25 bp)
TGGAGCACAATGAGGTCAGGGAAAA
LOC_Os06g11940
OsAffx.27574.1.S1_at--95--3471Chr06:6357610..6357634 (25 bp)
CAGGGAAAATATTGCGCCGTCGTCG
LOC_Os06g11940
OsAffx.27574.1.S1_at--263--4571Chr06:6357659..6357683 (25 bp)
GCGCCGCCAGCTGGGAGCTTTGATT
LOC_Os06g11940
OsAffx.27574.1.S1_at--748--8071Chr06:6357672..6357696 (25 bp)
GGAGCTTTGATTGGTCGCAGCTGAT
LOC_Os06g11940
OsAffx.27574.1.S1_at--880--4131Chr06:6357711..6357735 (25 bp)
CGCTCTACTCGCCAATAGTGATAGG
LOC_Os06g11940
OsAffx.27574.1.S1_at--724--931Chr06:6357733..6357757 (25 bp)
AGGAAGCCATGCGTACGACGACCTG
LOC_Os06g11940
OsAffx.27574.1.S1_at--29--1871Chr06:6357750..6357774 (25 bp)
ACGACCTGGCGGTGTGGCCCACGAC
LOC_Os06g11940
Target Sequence 
AGTTGTCGCGCGCACTAGAGATCTGCGCGAGGTGTATGCCTTCGCGGTCTCGCATGCCAACAGGCCGCCGCCGGTGGCTG
GAGAAACGGCTGCCACGGCTCTGGCTGCGATGGCGGCGCTGGAGCACAATGAGGTCAGGGAAAATATTGCGCCGTCGTCG
CCGCTGTCGGCAGTGCAGGTGGCGGCGCCGCCAGCTGGGAGCTTTGATTGGTCGCAGCTGATGGCGAACTCGCCGCCGCT
CTACTCGCCAATAGTGATAGGAAGCCATGCGTACGACGACCTGGCGGTGTGGCCCACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27574.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis