Browse Element(s) Details


Os.49822.1.S1_at

Description gb:AK111776.1
DB_XREF= gi:37988439
TID=Os.49822.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49822 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023075K19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075K19, full insert sequence.
FL= gb:AK111776.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1197011/11SRF-type transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11910Os.54099.1.S1_at11/116+6343014..6346602expressed protein
LOC_Os06g11920Os.5679.1.S1_at11/116+6348121..6351937Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os06g11930OsAffx.4805.1.S1_at11/116+6354146..6354982SNARE domain containing protein
LOC_Os06g11940OsAffx.27574.1.S1_at11/116+6357047..6357856AP2 domain containing protein, expressed
LOC_Os06g11950NANA6+6360090..6361250Zinc knuckle family protein
LOC_Os06g11960Os.16735.1.S1_at1/116+6368183..63696952,3-bisphosphoglycerate-dependent phosphoglycerate mutase, putative
LOC_Os06g11970Os.49822.1.S1_at11/116+6371354..6375375SRF-type transcription factor family protein, expressed
LOC_Os06g11980Os.7831.1.S1_at8/116+6394404..6396222expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009911biological_processpositive regulation of flower development
GO:0010154biological_processfruit development
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49822.1.S1_at--655--8551Chr06:6374334..6374358 (25 bp)
TGGATCAGACAGTGGTCCCGGAGAT
LOC_Os06g11970
Os.49822.1.S1_at--896--7991Chr06:6374361..6374385 (25 bp)
GGATGTGCCATGTGGACCAGCAGAA
LOC_Os06g11970
Os.49822.1.S1_at--541--3431Chr06:6374387..6374411 (25 bp)
CAGAGTGACGACTGGCAGGCGTACA
LOC_Os06g11970
Os.49822.1.S1_at--566--3471Chr06:6374402..6374426 (25 bp)
CAGGCGTACACGTCGGCGGAGTTCC
LOC_Os06g11970
Os.49822.1.S1_at--920--1851Chr06:6374969..6374990 (22 bp)
ACGAGGATACGATGGGCCCGATGTT
LOC_Os06g11970
Os.49822.1.S1_at--1044--711Chr06:6374986..6375010 (25 bp)
ATGTTGGCGTCATCACCGCTATTGA
LOC_Os06g11970
Os.49822.1.S1_at--708--2671Chr06:6375071..6375095 (25 bp)
AAGCGCCGGCTAACGATGGCAACGG
LOC_Os06g11970
Os.49822.1.S1_at--659--851Chr06:6375086..6375110 (25 bp)
ATGGCAACGGGTTATACGCAGCTGA
LOC_Os06g11970
Os.49822.1.S1_at--852--5671Chr06:6375112..6375136 (25 bp)
GACATTGCTCCGGTTAACGTTGGTT
LOC_Os06g11970
Os.49822.1.S1_at--233--7131Chr06:6375181..6375205 (25 bp)
GTCATGTTACTAGTGTGCCAGGAAT
LOC_Os06g11970
Os.49822.1.S1_at--1073--6251Chr06:6375250..6375274 (25 bp)
GATGGGCTGGGTGTGCCACAATTAA
LOC_Os06g11970
Target Sequence 
TGGATCAGACAGTGGTCCCGGAGATGGGGATGTGCCATGTGGACCAGCAGAACCAGAGTGACGACTGGCAGGCGTACACG
TCGGCGGAGTTCCTCAACGCGCTAATCCCGCCCACGCCGTTCCCTCTCGACGACGAGGATACGATGGGCCCGATGTTGGC
GTCATCACCGCTATTGATGCCCGGCATCCATGACCAGCAGCCGCCGGTGGAGGATATGGCGACGGCGGGCTGCTCGCAAG
CGCCGGCTAACGATGGCAACGGGTTATACGCAGCTGAGGACATTGCTCCGGTTAACGTTGGTTAATTAGATGCTTTTGTA
CTAGAAATTTATGGAATATATAGTGTTGTCATGTTACTAGTGTGCCAGGAATTGAAGCTAAGGATTTTTAGTTTGGAATT
TTTTTTCTTTGATCATGATGGGCTGGGTGTGCCACAATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49822.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis