Browse Element(s) Details


Os.54099.1.S1_at

Description gb:AK101914.1
DB_XREF= gi:32987123
TID=Os.54099.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54099 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071H10, full insert sequence.
FL= gb:AK101914.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1191011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11880NANA6+6315295..6318626transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g11890Os.47463.1.S1_x_at4/116+6321150..6324870transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g11890Os.14491.2.S1_x_at4/116+6321150..6324870transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g11900OsAffx.15378.1.S1_at11/116+6332935..6333979hypothetical protein
LOC_Os06g11910Os.54099.1.S1_at11/116+6343014..6346602expressed protein
LOC_Os06g11920Os.5679.1.S1_at11/116+6348121..6351937Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os06g11930OsAffx.4805.1.S1_at11/116+6354146..6354982SNARE domain containing protein
LOC_Os06g11940OsAffx.27574.1.S1_at11/116+6357047..6357856AP2 domain containing protein, expressed
LOC_Os06g11950NANA6+6360090..6361250Zinc knuckle family protein
LOC_Os06g11960Os.16735.1.S1_at1/116+6368183..63696952,3-bisphosphoglycerate-dependent phosphoglycerate mutase, putative
LOC_Os06g11970Os.49822.1.S1_at11/116+6371354..6375375SRF-type transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54099.1.S1_at--533--10451Chr06:6343690..6343714 (25 bp)
TTAGTTCCTTTGACACATTTGCATG
LOC_Os06g11910
Os.54099.1.S1_at--244--611Chr06:6343646..6343670 (25 bp)
ATGCCCATCTCCAATGTAGGTCTGA
LOC_Os06g11910
Os.54099.1.S1_at--147--751Chr06:6343633..6343657 (25 bp)
ATGTAGGTCTGATGCGTTGTCAACA
LOC_Os06g11910
Os.54099.1.S1_at--865--6631Chr06:6343513..6343642 (25 bp)
GTTGTCAACAACTCAGGCATTGCAT
LOC_Os06g11910
Os.54099.1.S1_at--630--6771Chr06:6343485..6343509 (25 bp)
GTTACAGGTGAACATAGCCCAGCCC
LOC_Os06g11910
Os.54099.1.S1_at--55--311Chr06:6343472..6343496 (25 bp)
ATAGCCCAGCCCATATGGTGTGTTT
LOC_Os06g11910
Os.54099.1.S1_at--334--9971Chr06:6343353..6343377 (25 bp)
TACCTCAGGTTGGTTTTATCTCTAA
LOC_Os06g11910
Os.54099.1.S1_at--325--4912Chr08:11321728..11321790 (24 bp)
GCTTCATGTCCTTTCTTTTGTTTTT
NONE
Os.54099.1.S1_at--273--7131Chr06:6343205..6343229 (25 bp)
GTCATGTGCATCCTTGATACAGACA
LOC_Os06g11910
Os.54099.1.S1_at--60--2151Chr06:6343187..6343211 (25 bp)
ACAGACACCTTCCATTATCTAACAA
LOC_Os06g11910
Os.54099.1.S1_at--790--9771Chr06:6343048..6343072 (25 bp)
TAATGGCCAGGCACACAAACTTAGA
LOC_Os06g11910
Target Sequence 
TTAGTTCCTTTGACACATTTGCATGAACATACGATGCCATTTGGATGCCCATCTCCAATGTAGGTCTGATGCGTTGTCAA
CAACTCAGGCATTGCATTGAGTTACAGGTGAACATAGCCCAGCCCATATGGTGTGTTTGGTAACTTTGGAATATATGCAC
CAAGTGAATTAGAAACATGGGAATATTTCAATCATACATCGCAGATCAAAACAAGGAGAAAACTTGAGGTCTTACCTCAG
GTTGGTTTTATCTCTAAAATTGCCTAGATGTAGAATTTGTGAGGGCTAGATGTTTTTTTCTCTATAATCAGTTGAAGGTT
TTGGAGGTTTGCTTCATGTCCTTTCTTTTGTTTTTTATGCATTATGTGCGTGTTGCATTTGTCATGTGCATCCTTGATAC
AGACACCTTCCATTATCTAACAAGCAACAGGCCTTAGATGACAGGCTCTATGTGGAAAGCTTTTTTCTGCTGTGTGTAAA
GTGAACTGATTTTCTCAAAATTTTGCTAAGTTTTTTTTTTTTTACTTCAAAACAGGCCTAATGGCCAGGCACACAAACTT
AGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54099.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis