Browse Element(s) Details


OsAffx.15402.1.S1_at

Description tigr:9634.m01295
TID=OsAffx.15402.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=HhH-GPD superfamily base excision DNA repair protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1307011/11HhH-GPD superfamily base excision DNA repair protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13040OsAffx.15401.1.S1_at10/116+7143532..7145046Glycosyl hydrolases family 16 protein, expressed
LOC_Os06g13050OsAffx.27599.1.S1_at11/116+7147962..7157823Peroxidase family protein, expressed
LOC_Os06g13050Os.26702.1.A1_s_at4/116+7147962..7157823Peroxidase family protein, expressed
LOC_Os06g13060OsAffx.4821.1.S1_at11/116+7159388..7163157Chaperone protein dnaJ 16, putative, expressed
LOC_Os06g13070OsAffx.15402.1.S1_at11/116+7169698..7171450HhH-GPD superfamily base excision DNA repair protein
LOC_Os06g13080OsAffx.4822.1.S1_at11/116+7180703..7182460U-box domain containing protein, expressed
LOC_Os06g13090NANA6+7185602..7187077U-box domain containing protein, expressed
LOC_Os06g13100OsAffx.27601.1.S1_at11/116+7187425..7190424CREG1 protein precursor, putative, expressed
LOC_Os06g13100Os.15218.1.S1_at11/116+7187425..7190424CREG1 protein precursor, putative, expressed
LOC_Os06g13110OsAffx.27658.1.S1_at8/116+7195592..7200418retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0006284biological_processbase-excision repair
GO:0006342biological_processchromatin silencing
GO:0005634cellular_componentnucleus
GO:0003906molecular_functionDNA-(apurinic or apyrimidinic site) lyase activity
GO:0019104molecular_functionDNA N-glycosylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15402.1.S1_at--834--1251Chr06:7170901..7170925 (25 bp)
AGATTTGCCTCGAGTATTTGCGGGA
LOC_Os06g13070
OsAffx.15402.1.S1_at--406--211Chr06:7170886..7170910 (25 bp)
ATTTGCGGGATCTGTCCGTGGATGA
LOC_Os06g13070
OsAffx.15402.1.S1_at--86--7351Chr06:7170860..7170884 (25 bp)
GTGAAGACTGAGCTATCTCGGTTCA
LOC_Os06g13070
OsAffx.15402.1.S1_at--188--9491Chr06:7170845..7170869 (25 bp)
TCTCGGTTCAAAGGGATCGGGCCAA
LOC_Os06g13070
OsAffx.15402.1.S1_at--1078--8471Chr06:7170062..7170086 (25 bp)
TGGCGTGTGTGCTGATGTTCTATCT
LOC_Os06g13070
OsAffx.15402.1.S1_at--1013--6931Chr06:7169928..7170042 (25 bp)
GTAGATACTCATGTACTCCGTATTA
LOC_Os06g13070
OsAffx.15402.1.S1_at--921--2591Chr06:7169901..7169925 (25 bp)
AACGCTATTGGTTGGGTTCCTGCAA
LOC_Os06g13070
OsAffx.15402.1.S1_at--76--6031Chr06:7169865..7169889 (25 bp)
GAGAGGGCATATCTTCATCTGAACA
LOC_Os06g13070
OsAffx.15402.1.S1_at--674--7051Chr06:7169796..7169820 (25 bp)
GTAACTCATGGAAAGCTCTGTCAAT
LOC_Os06g13070
OsAffx.15402.1.S1_at--671--2691Chr06:7169784..7169808 (25 bp)
AAGCTCTGTCAATCATGTTCCAAAA
LOC_Os06g13070
OsAffx.15402.1.S1_at--1057--3351Chr06:7169740..7169764 (25 bp)
CACCGGTTCAAATTCTATGTGCCCC
LOC_Os06g13070
Target Sequence 
AGATTTGCCTCGAGTATTTGCGGGATCTGTCCGTGGATGAGGTGAAGACTGAGCTATCTCGGTTCAAAGGGATCGGGCCA
AAGACTGTGGCGTGTGTGCTGATGTTCTATCTTCAGAAGGATGATTTTCCAGTAGATACTCATGTACTCCGTATTACAAA
CGCTATTGGTTGGGTTCCTGCAACAGCTAGCAGAGAGAGGGCATATCTTCATCTGAACAGCAAAATTCCTGATGATCTAA
AATTTGATCTGAATTGTCTATTTGTAACTCATGGAAAGCTCTGTCAATCATGTTCCAAAAAGTTAGGAGGCCAGAAAACC
ACCGGTTCAAATTCTATGTGCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15402.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis