Browse Element(s) Details


OsAffx.15408.1.S1_at

Description tigr:9634.m01336
TID=OsAffx.15408.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=CysMet metabolism PLP-dependent enzyme
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1345010/11Cys/Met metabolism PLP-dependent enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13410OsAffx.4827.1.S1_at11/116+7375287..7375933hypothetical protein
LOC_Os06g13420OsAffx.27611.1.S1_at11/116+7377699..7379891hypothetical protein
LOC_Os06g13430NANA6+7387963..7392345retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g13440OsAffx.4828.1.S1_at11/116+7396013..7396463hypothetical protein
LOC_Os06g13450OsAffx.15408.1.S1_at10/116+7400128..7403268Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os06g13460Os.52964.1.S1_at11/116+7405038..7407610Jasmonate O-methyltransferase, putative, expressed
LOC_Os06g13470OsAffx.27612.1.S1_at11/116+7416745..7421148SAM dependent carboxyl methyltransferase family protein
LOC_Os06g13480OsAffx.27613.1.S1_at11/116+7422690..7423046hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009086biological_processmethionine biosynthesis
GO:0019279biological_processmethionine biosynthesis from L-homoserine via cystathione
GO:0009507cellular_componentchloroplast
GO:0003962molecular_functioncystathionine gamma-synthase activity
GO:0004121molecular_functioncystathionine beta-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15408.1.S1_at--974--9211Chr06:7401178..7401342 (25 bp)
TCCACTCCCATCACCAAGTGATTGG
LOC_Os06g13450
OsAffx.15408.1.S1_at--185--9371Chr06:7401457..7401481 (25 bp)
TTGGGAAACCCCATGGGTGACGGAT
LOC_Os06g13450
OsAffx.15408.1.S1_at--316--7771Chr06:7401472..7401496 (25 bp)
GGTGACGGATTTTACAACCGGTATG
LOC_Os06g13450
OsAffx.15408.1.S1_at--1052--6611Chr06:7401500..7401523 (24 bp)
GTTGGATTTCTTAACTGGCACCCGA
LOC_Os06g13450
OsAffx.15408.1.S1_at--1151--8231NONE
GGCACCCGAATGCAGCGTACATGAT
NONE
OsAffx.15408.1.S1_at--212--7031Chr06:7402411..7402435 (25 bp)
GTACATGATCATTCGCGGTCTAAAG
LOC_Os06g13450
OsAffx.15408.1.S1_at--917--10591Chr06:7402422..7402446 (25 bp)
TTCGCGGTCTAAAGACGATGGCGCT
LOC_Os06g13450
OsAffx.15408.1.S1_at--651--1751Chr06:7402503..7402527 (25 bp)
ACCCCAAGGTGGAGCGTGTCAACTA
LOC_Os06g13450
OsAffx.15408.1.S1_at--901--7071Chr06:7402520..7402544 (25 bp)
GTCAACTACCCGTGGCTGGAGAGCA
LOC_Os06g13450
OsAffx.15408.1.S1_at--401--9371Chr06:7402641..7402665 (25 bp)
TCGACGCGCTGGAGTTGCCCTTCAT
LOC_Os06g13450
OsAffx.15408.1.S1_at--189--10531Chr06:7402661..7402685 (25 bp)
TTCATCGCGACTTCGCTCGGCGGGT
LOC_Os06g13450
Target Sequence 
TCCACTCCCATCACCAAGTGATTGGTGCCGGTTGGGAAACCCCATGGGTGACGGATTTTACAACCGGTATGGGTGTTGGA
TTTCTTAACTGGCACCCGAATGCAGCGTACATGATCATTCGCGGTCTAAAGACGATGGCGCTGCGGGTGGAGGCGCAGAA
CCGGACGGCGCTGCGGGTGGCACGGCTGCTGGAGAGGCACCCCAAGGTGGAGCGTGTCAACTACCCGTGGCTGGAGAGCA
GCCCGTGGCACGGCGTCGCGAGGAAGCAGATGACCGGCGCCGGCGGCGTGATCAGCTTCGAGGTGGCGTCGGACATGCGC
GGGGCGATGAGGTTCGTCGACGCGCTGGAGTTGCCCTTCATCGCGACTTCGCTCGGCGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15408.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis