Browse Element(s) Details


OsAffx.4828.1.S1_at

Description tigr:9634.m01335
TID=OsAffx.4828.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1344011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13399NANA6+7372075..7372597NA
LOC_Os06g13410OsAffx.4827.1.S1_at11/116+7375287..7375933hypothetical protein
LOC_Os06g13420OsAffx.27611.1.S1_at11/116+7377699..7379891hypothetical protein
LOC_Os06g13430NANA6+7387963..7392345retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g13440OsAffx.4828.1.S1_at11/116+7396013..7396463hypothetical protein
LOC_Os06g13450OsAffx.15408.1.S1_at10/116+7400128..7403268Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os06g13460Os.52964.1.S1_at11/116+7405038..7407610Jasmonate O-methyltransferase, putative, expressed
LOC_Os06g13470OsAffx.27612.1.S1_at11/116+7416745..7421148SAM dependent carboxyl methyltransferase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4828.1.S1_at--143--1531Chr06:7396199..7396416 (25 bp)
AGCATCGGTGGCGTGTAGTGTTGGT
LOC_Os06g13440
OsAffx.4828.1.S1_at--52--8771Chr06:7396181..7396205 (25 bp)
TGTTGGTGGTAAGCGGGATGGTGTC
LOC_Os06g13440
OsAffx.4828.1.S1_at--700--811Chr06:7396164..7396188 (25 bp)
ATGGTGTCCATGGTGGATCCGGCAT
LOC_Os06g13440
OsAffx.4828.1.S1_at--1091--8611Chr06:7396163..7396187 (25 bp)
TGGTGTCCATGGTGGATCCGGCATC
LOC_Os06g13440
OsAffx.4828.1.S1_at--1140--7251Chr06:7396159..7396183 (25 bp)
GTCCATGGTGGATCCGGCATCGGTG
LOC_Os06g13440
OsAffx.4828.1.S1_at--387--6271Chr06:7396081..7396105 (25 bp)
GATGTCAACGGCCATTCCCACAACA
LOC_Os06g13440
OsAffx.4828.1.S1_at--849--2471Chr06:7396075..7396099 (25 bp)
AACGGCCATTCCCACAACATATCAA
LOC_Os06g13440
OsAffx.4828.1.S1_at--965--4431Chr06:7396071..7396095 (25 bp)
GCCATTCCCACAACATATCAAGCAT
LOC_Os06g13440
OsAffx.4828.1.S1_at--267--3591Chr06:7396069..7396093 (25 bp)
CATTCCCACAACATATCAAGCATCA
LOC_Os06g13440
OsAffx.4828.1.S1_at--437--10171Chr06:7396056..7396080 (25 bp)
TATCAAGCATCATCTGCGTCGGCGG
LOC_Os06g13440
OsAffx.4828.1.S1_at--802--371Chr06:7396055..7396079 (25 bp)
ATCAAGCATCATCTGCGTCGGCGGC
LOC_Os06g13440
Target Sequence 
AGCATCGGTGGCGTGTAGTGTTGGTGGTAAGCGGGATGGTGTCCATGGTGGATCCGGCATCGGTGGCATGCGGGGTGGCA
TTGCTGGTGTGCGGGGCAACGTCAGCGGCGGCAGGGGCGATGTCAACGGCCATTCCCACAACATATCAAGCATCATCTGC
GTCGGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4828.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis