Browse Element(s) Details


OsAffx.15427.1.S1_at

Description tigr:9634.m01465
TID=OsAffx.15427.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1464011/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14590NANA6+8210536..8216646retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g14600NANA6+8216962..8219918retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g14610NANA6+8221479..8223416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g14620NANA6+8229483..8231112Ribonucleoside-diphosphate reductase small chain, putative, expressed
LOC_Os06g14630Os.55736.1.S1_at11/116+8235903..8237700GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g14640OsAffx.15427.1.S1_at11/116+8237999..8238475Zinc finger, C3HC4 type family protein
LOC_Os06g14650OsAffx.15428.1.S1_at11/116+8240588..8244450Zinc finger, C3HC4 type family protein
LOC_Os06g14660OsAffx.15429.1.S1_at11/116+8246114..8246500hypothetical protein
LOC_Os06g14670Os.55096.1.S1_at11/116+8250039..8251391Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g14670Os.57514.1.S1_x_at1/116+8250039..8251391Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g14680NANA6+8255352..8258661transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15427.1.S1_at--26--9431Chr06:8238030..8238054 (25 bp)
TCGTGGTTGACGTGGCGTTCGTCCT
LOC_Os06g14640
OsAffx.15427.1.S1_at--648--1911Chr06:8238039..8238063 (25 bp)
ACGTGGCGTTCGTCCTGTGCCTTAT
LOC_Os06g14640
OsAffx.15427.1.S1_at--389--7251Chr06:8238050..8238074 (25 bp)
GTCCTGTGCCTTATCGTGGCGATCA
LOC_Os06g14640
OsAffx.15427.1.S1_at--241--10431Chr06:8238060..8238084 (25 bp)
TTATCGTGGCGATCATGTGCTGCTG
LOC_Os06g14640
OsAffx.15427.1.S1_at--999--8371Chr06:8238067..8238091 (25 bp)
GGCGATCATGTGCTGCTGCGAGGAC
LOC_Os06g14640
OsAffx.15427.1.S1_at--584--4271Chr06:8238104..8238128 (25 bp)
CCTCGGTCATCATCTCAACGGGACG
LOC_Os06g14640
OsAffx.15427.1.S1_at--237--7131Chr06:8238109..8238133 (25 bp)
GTCATCATCTCAACGGGACGCCCAA
LOC_Os06g14640
OsAffx.15427.1.S1_at--1133--2731Chr06:8238383..8238407 (25 bp)
AAGAAGAGCGATAGCTGCCCGCTGT
LOC_Os06g14640
OsAffx.15427.1.S1_at--911--1371Chr06:8238387..8238411 (25 bp)
AGAGCGATAGCTGCCCGCTGTGCAG
LOC_Os06g14640
OsAffx.15427.1.S1_at--973--4531Chr06:8238399..8238423 (25 bp)
GCCCGCTGTGCAGGGTGAAGATCTC
LOC_Os06g14640
OsAffx.15427.1.S1_at--833--451Chr06:8238419..8238443 (25 bp)
ATCTCGTCGTGGATTGCAGGGCCGA
LOC_Os06g14640
Target Sequence 
TCGTGGTTGACGTGGCGTTCGTCCTGTGCCTTATCGTGGCGATCATGTGCTGCTGCGAGGACGACCGCCGACGACCTCGG
TCATCATCTCAACGGGACGCCCAAGTCGGAGGACGGGTGGTGATGCTGCGGGTGGTGGAGGCGCCCCCGGGCCAGCAGCG
AGTGGCGCCGGCGGCAGCGAAGGCGGCGCTGCCCTACTTCCCGTACGCGCAGGCCCAGGGCAGGACGTCGTCGTCGGAGA
CGCAGACGCTGGTGTGCGCCGTCTGCCTGGAGGAGCTCAGGCACGGCGAGCTGTGCAGCGAGGTGCCGGCGTGCCGCCAC
ATTTTCCACAGGGGGTGCGTCGGGTCGTGGATGAAGAAGAGCGATAGCTGCCCGCTGTGCAGGGTGAAGATCTCGTCGTG
GATTGCAGGGCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15427.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis