Browse Element(s) Details


OsAffx.15428.1.S1_at

Description tigr:9634.m01466
TID=OsAffx.15428.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1465011/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14590NANA6+8210536..8216646retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g14600NANA6+8216962..8219918retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g14610NANA6+8221479..8223416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g14620NANA6+8229483..8231112Ribonucleoside-diphosphate reductase small chain, putative, expressed
LOC_Os06g14630Os.55736.1.S1_at11/116+8235903..8237700GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g14640OsAffx.15427.1.S1_at11/116+8237999..8238475Zinc finger, C3HC4 type family protein
LOC_Os06g14650OsAffx.15428.1.S1_at11/116+8240588..8244450Zinc finger, C3HC4 type family protein
LOC_Os06g14660OsAffx.15429.1.S1_at11/116+8246114..8246500hypothetical protein
LOC_Os06g14670Os.55096.1.S1_at11/116+8250039..8251391Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g14670Os.57514.1.S1_x_at1/116+8250039..8251391Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g14680NANA6+8255352..8258661transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g14690NANA6+8267311..8267880transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15428.1.S1_at--499--971Chr06:8240627..8240651 (25 bp)
AGGAGCGCCCACCACGGCAATCGTA
LOC_Os06g14650
OsAffx.15428.1.S1_at--953--8211Chr06:8240642..8240666 (25 bp)
GGCAATCGTACCTCATCCTTGAAGA
LOC_Os06g14650
OsAffx.15428.1.S1_at--483--6971Chr06:8240649..8240673 (25 bp)
GTACCTCATCCTTGAAGACGGTGCA
LOC_Os06g14650
OsAffx.15428.1.S1_at--99--2771Chr06:8240663..8240687 (25 bp)
AAGACGGTGCAGAGCACCAGCGCCT
LOC_Os06g14650
OsAffx.15428.1.S1_at--437--951Chr06:8244005..8244029 (25 bp)
AGGACGCCGGGAGACCTCAGGCTCA
LOC_Os06g14650
OsAffx.15428.1.S1_at--455--5991Chr06:8244015..8244039 (25 bp)
GAGACCTCAGGCTCAGGTTCAGGTG
LOC_Os06g14650
OsAffx.15428.1.S1_at--119--4711Chr06:8244119..8244143 (25 bp)
GCGGCGTGAGCTTAGGGACTCATCA
LOC_Os06g14650
OsAffx.15428.1.S1_at--793--4891Chr06:8244128..8244152 (25 bp)
GCTTAGGGACTCATCAGGCTGATCA
LOC_Os06g14650
OsAffx.15428.1.S1_at--86--5731Chr06:8244331..8244355 (25 bp)
GACTGCGTCGCGCTGTGGATCAAGA
LOC_Os06g14650
OsAffx.15428.1.S1_at--1116--2771Chr06:8244352..8244376 (25 bp)
AAGAGCAAGAGCACGTGCCCGCTGT
LOC_Os06g14650
OsAffx.15428.1.S1_at--167--9511Chr06:8244389..8244413 (25 bp)
TCTCGCCGTGGTTCTCGGGATCGAT
LOC_Os06g14650
Target Sequence 
AGGAGCGCCCACCACGGCAATCGTACCTCATCCTTGAAGACGGTGCAGAGCACCAGCGCCTCCGCCATGGCCAACGCGGC
GGCTGGCGCCGGCGGCGAGGACGCCGGGAGACCTCAGGCTCAGGTTCAGGTGGCGGCGGTGGAGGTGCGGTCGTACTTCC
CGTTCCCGTACGCCGCCGGCCCGTTCCGGCCCTCCGCGGGCGGCGGCGGCGGCGGCGTGAGCTTAGGGACTCATCAGGCT
GATCAGCCGCCGGCGCCGGAGGTGGTGGCGGCGCAGCAGCAGCTGCCGCACTTCCCGTACGCGCCGCGGGGCGGTGGCAG
CGCCAGCGCGTCGTTGTCGGTGGAGTGCGCGATCTGCCTGGAGCGGCTCCGGCGCGGCGAGCTGTGCAGCGAGTTGCCGG
AGTGCCGCCACGTGTTCCACCGGGACTGCGTCGCGCTGTGGATCAAGAGCAAGAGCACGTGCCCGCTGTGCAGGGCGCGG
ATCTCGCCGTGGTTCTCGGGATCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15428.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis