Browse Element(s) Details


OsAffx.15429.1.S1_at

Description tigr:9634.m01467
TID=OsAffx.15429.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1466011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14610NANA6+8221479..8223416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g14620NANA6+8229483..8231112Ribonucleoside-diphosphate reductase small chain, putative, expressed
LOC_Os06g14630Os.55736.1.S1_at11/116+8235903..8237700GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g14640OsAffx.15427.1.S1_at11/116+8237999..8238475Zinc finger, C3HC4 type family protein
LOC_Os06g14650OsAffx.15428.1.S1_at11/116+8240588..8244450Zinc finger, C3HC4 type family protein
LOC_Os06g14660OsAffx.15429.1.S1_at11/116+8246114..8246500hypothetical protein
LOC_Os06g14670Os.55096.1.S1_at11/116+8250039..8251391Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g14670Os.57514.1.S1_x_at1/116+8250039..8251391Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g14680NANA6+8255352..8258661transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g14690NANA6+8267311..8267880transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15429.1.S1_at--878--91Chr06:8246144..8246168 (25 bp)
ATTCGGTCTGGAACATTCCCAGATC
LOC_Os06g14660
OsAffx.15429.1.S1_at--752--1271Chr06:8246164..8246188 (25 bp)
AGATCAATGGGTGCCAGCTCTCCGT
LOC_Os06g14660
OsAffx.15429.1.S1_at--645--9991Chr06:8246194..8246218 (25 bp)
TAGCTGTCCCCTGTCCGGTGTTGAG
LOC_Os06g14660
OsAffx.15429.1.S1_at--1056--9251Chr06:8246207..8246231 (25 bp)
TCCGGTGTTGAGCTGCAAAAGCCCC
LOC_Os06g14660
OsAffx.15429.1.S1_at--975--3311Chr06:8246301..8246325 (25 bp)
CAGAGACCCAGGAGGAGACCGTGCC
LOC_Os06g14660
OsAffx.15429.1.S1_at--43--8191Chr06:8246330..8246354 (25 bp)
GGAACCGTCCAGAAGCGCACGCGCA
LOC_Os06g14660
OsAffx.15429.1.S1_at--27--6191Chr06:8246361..8246385 (25 bp)
GAGGAGCCAGCCACAAGTCGCGGTC
LOC_Os06g14660
OsAffx.15429.1.S1_at--60--3311Chr06:8246372..8246396 (25 bp)
CACAAGTCGCGGTCGCACGAACGGG
LOC_Os06g14660
OsAffx.15429.1.S1_at--1024--531Chr06:8246404..8246428 (25 bp)
ATCGCGCGGATCTTACGGCGTGTTA
LOC_Os06g14660
OsAffx.15429.1.S1_at--683--10471Chr06:8246416..8246440 (25 bp)
TTACGGCGTGTTACGGCATTGTGTC
LOC_Os06g14660
OsAffx.15429.1.S1_at--513--7951Chr06:8246446..8246470 (25 bp)
GGATAGCTGGCTCGTTGGCGTACAT
LOC_Os06g14660
Target Sequence 
ATTCGGTCTGGAACATTCCCAGATCAATGGGTGCCAGCTCTCCGTGTCGCTAGCTGTCCCCTGTCCGGTGTTGAGCTGCA
AAAGCCCCCGGCGACCAATCGCCCGCGGGAGCTTGCGCGGCCGCGGGTCAACACGTCGCGCGGGCGCGCCGGCCGTGCAG
AGACCCAGGAGGAGACCGTGCCGCGCGGAACCGTCCAGAAGCGCACGCGCACGCGCAGAGGAGCCAGCCACAAGTCGCGG
TCGCACGAACGGGACGCCGGATCGCGCGGATCTTACGGCGTGTTACGGCATTGTGTCGTGGGGGATAGCTGGCTCGTTGG
CGTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15429.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis