Browse Element(s) Details


OsAffx.15454.1.S1_x_at

Description tigr:9634.m01627
TID=OsAffx.15454.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1620011/11expressed protein
LOC_Os06g161704/11expressed protein
LOC_Os06g162402/11expressed protein
LOC_Os09g208501/11expressed protein
LOC_Os06g161601/11expressed protein
LOC_Os11g376301/11hypothetical protein
LOC_Os02g149801/11Sodium/calcium exchanger protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16150OsAffx.31349.2.S1_x_at9/116+9195475..9196710hypothetical protein
LOC_Os06g16150OsAffx.31349.1.S1_x_at8/116+9195475..9196710hypothetical protein
LOC_Os06g16160OsAffx.31349.2.S1_x_at11/116+9201969..9205436expressed protein
LOC_Os06g16160OsAffx.31349.1.S1_x_at6/116+9201969..9205436expressed protein
LOC_Os06g16160OsAffx.15454.1.S1_x_at1/116+9201969..9205436expressed protein
LOC_Os06g16160OsAffx.15454.2.S1_x_at1/116+9201969..9205436expressed protein
LOC_Os06g16170OsAffx.15454.2.S1_x_at11/116+9206919..9208514expressed protein
LOC_Os06g16170OsAffx.15454.1.S1_x_at4/116+9206919..9208514expressed protein
LOC_Os06g16180NANA6+9214329..9214598hypothetical protein
LOC_Os06g16190NANA6+9218661..9218870hypothetical protein
LOC_Os06g16200OsAffx.15454.1.S1_x_at11/116+9220517..9222358expressed protein
LOC_Os06g16200OsAffx.15454.2.S1_x_at5/116+9220517..9222358expressed protein
LOC_Os06g16210NANA6+9229392..9230028hypothetical protein
LOC_Os06g16220NANA6+9233087..9236324transposon protein, putative, unclassified
LOC_Os06g16230NANA6+9236954..9243111transposon protein, putative, unclassified
LOC_Os06g16240Os.37647.2.S1_at11/116+9245723..9247373expressed protein
LOC_Os06g16240OsAffx.15454.2.S1_x_at2/116+9245723..9247373expressed protein
LOC_Os06g16240OsAffx.15454.1.S1_x_at2/116+9245723..9247373expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15454.1.S1_x_at--515--9411Chr06:9221775..9221799 (25 bp)
TCGTCGTCTCCACGGCCAACTGGTT
LOC_Os06g16200
OsAffx.15454.1.S1_x_at--161--3091Chr06:9221791..9221815 (25 bp)
CAACTGGTTCAACCGGCCGACCATG
LOC_Os06g16200
OsAffx.15454.1.S1_x_at--48--2631Chr06:9221801..9221825 (25 bp)
AACCGGCCGACCATGTTCCACGAGG
LOC_Os06g16200
OsAffx.15454.1.S1_x_at--237--10631Chr06:9221954..9221978 (25 bp)
TTCGACGGCACGGTGATCGTGCGCA
LOC_Os06g16200
OsAffx.15454.1.S1_x_at--320--9371Chr06:9222078..9222102 (25 bp)
TCGACTTCCACACGGTGCAGGTGGA
LOC_Os06g16200
OsAffx.15454.1.S1_x_at--761--5312Chr06:9222238..9222262 (25 bp)
GAAGGTGACGCTGTACAACGACTGC
LOC_Os06g16200
OsAffx.15454.1.S1_x_at--42--3896Chr09:12555730..12555749 (20 bp)
CTGTACAACGACTGCGTGCACTGGT
LOC_Os09g20850
OsAffx.15454.1.S1_x_at--494--3831Chr06:9222259..9222283 (25 bp)
CTGCGTGCACTGGTGCCTGCCTGGA
LOC_Os06g16200
OsAffx.15454.1.S1_x_at--243--9191Chr06:9222276..9222300 (25 bp)
TGCCTGGACCCATCGACGTGTGGAA
LOC_Os06g16200
OsAffx.15454.1.S1_x_at--981--5752Chr06:9222290..9222314 (25 bp)
GACGTGTGGAACGAGATGCTGCTCC
LOC_Os06g16200
OsAffx.15454.1.S1_x_at--401--6034Chr06:9247118..9247142 (25 bp)
GAGATGCTGCTCCAGATGCTGCTGC
LOC_Os06g16240
Target Sequence 
TCGTCGTCTCCACGGCCAACTGGTTCAACCGGCCGACCATGTTCCACGAGGCCGGCCGCCTCGTCGGCTGCCACCACTGC
CTCGTCCCCGGCGTCGCCGACCTCAAGCGCACCTACTCCCTGCGCGCCGCGTTCCGCACCGCGCTGCGCGCGCTCACCGC
CGGCGCCGGCGGCGCCGGCTTCGACGGCACGGTGATCGTGCGCACGCTGTCGCCGACGTCGCACTTCGAGGGCGGGGAGT
GGAACAAGGGCGGCGACTGCCGGCGCACGCGGCCGACCGCGGCGCGGATGGCTGGGCTGGACCTCGACTTCCACACGGTG
CAGGTGGAGGAGTTCAGGAGGGCGGAGGCGGCGGCGGCGGCGGCGAGCGGTGGCGCGGCGAGGCTGCTGCTGATGGACAC
GACGGCGGTGATGGTGGCGCGGGCGGACGGGCACCCGAGCAGGTACGGGCACTGGGCGCACGAGAAGGTGACGCTGTACA
ACGACTGCGTGCACTGGTGCCTGCCTGGACCCATCGACGTGTGGAACGAGATGCTGCTCCAGATGCTGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15454.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis