Browse Element(s) Details


OsAffx.15456.1.S1_at

Description tigr:9634.m01643
TID=OsAffx.15456.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1634011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16320NANA6+9297392..9303352retrotransposon protein, putative, unclassified
LOC_Os06g16330Os.20348.1.S1_at11/116+9314992..9322904BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os06g16330Os.52743.1.S1_at11/116+9314992..9322904BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os06g16340OsAffx.15456.1.S1_at11/116+9323263..9324420hypothetical protein
LOC_Os06g16340OsAffx.28592.1.S1_at2/116+9323263..9324420hypothetical protein
LOC_Os06g16340OsAffx.12284.1.S1_x_at1/116+9323263..9324420hypothetical protein
LOC_Os06g16350Os.1131.1.S1_at11/116+9325054..9327207Peroxidase 11 precursor, putative, expressed
LOC_Os06g16350Os.1131.2.S1_x_at11/116+9325054..9327207Peroxidase 11 precursor, putative, expressed
LOC_Os06g16360OsAffx.15457.1.S1_at11/116+9332214..9332864hypothetical protein
LOC_Os06g16370Os.1189.1.S1_at11/116+9335377..9337570Hd1, putative, expressed
LOC_Os06g16380NANA6+9348328..9349580hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15456.1.S1_at--144--8651Chr06:9324299..9324323 (25 bp)
TGCCGTTAATCTCACCGTCGAGGCC
LOC_Os06g16340
OsAffx.15456.1.S1_at--757--2151Chr06:9323922..9324295 (25 bp)
ACAGCCATGTGCGAAGCAGCAAGAA
LOC_Os06g16340
OsAffx.15456.1.S1_at--354--1771Chr06:9323790..9323913 (25 bp)
ACCGGCGGTACTTGATGCTAGACAT
LOC_Os06g16340
OsAffx.15456.1.S1_at--234--4871Chr06:9323774..9323798 (25 bp)
GCTAGACATCTCATACTCACAAGTA
LOC_Os06g16340
OsAffx.15456.1.S1_at--1108--5811Chr06:9323563..9323632 (25 bp)
GACCCGCAAGCATAGCGATGGGCTA
LOC_Os06g16340
OsAffx.15456.1.S1_at--48--2931Chr06:9323536..9323560 (25 bp)
AAGGAGCATGACAGCTTTCAGCGTC
LOC_Os06g16340
OsAffx.15456.1.S1_at--484--4891Chr06:9323523..9323547 (25 bp)
GCTTTCAGCGTCACCGGTGTGATAA
LOC_Os06g16340
OsAffx.15456.1.S1_at--152--2191Chr06:9323485..9323509 (25 bp)
ACAAAGAACTCGACGACTCTCCTAT
LOC_Os06g16340
OsAffx.15456.1.S1_at--467--1791Chr06:9323337..9323361 (25 bp)
ACCGATCTCACCACCATAGTTGACT
LOC_Os06g16340
OsAffx.15456.1.S1_at--262--3571Chr06:9323323..9323347 (25 bp)
CATAGTTGACTCCTTCCTTGCCGAC
LOC_Os06g16340
OsAffx.15456.1.S1_at--575--3331Chr06:9323297..9323321 (25 bp)
CACTGATTCTGATGATCCCCGATGC
LOC_Os06g16340
Target Sequence 
TGCCGTTAATCTCACCGTCGAGGCCGCCACAGCCATGTGCGAAGCAGCAAGAAGAGGAGGCACCGGCGGTACTTGATGCT
AGACATCTCATACTCACAAGTATTAGAGCTCCCCCTTCCCATGCCTTGACCCGCAAGCATAGCGATGGGCTAGCAAGGAG
CATGACAGCTTTCAGCGTCACCGGTGTGATAATCTCAAGGTTTGCACAAAGAACTCGACGACTCTCCTATCCACTTCGTC
AACTCCGAGCCCTCCACGCCAAGACCGGCCGCCTCCACCTTCTAGTTGGTGCCCCGGACCTTGTCTCCCTCCGCTTCGCC
ACCTCCCTTTCCTTCCTCCTCGCACATGACAACACCGATCTCACCACCATAGTTGACTCCTTCCTTGCCGACCCACTGAT
TCTGATGATCCCCGATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15456.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis