Browse Element(s) Details


OsAffx.15462.1.S1_at

Description tigr:9634.m01675
TID=OsAffx.15462.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1665011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16610OsAffx.15461.1.S1_at11/116+9549450..9549710hypothetical protein
LOC_Os06g16620OsAffx.5031.5.S1_x_at11/116+9551316..9551657hypothetical protein
LOC_Os06g16630NANA6+9553821..9554620hypothetical protein
LOC_Os06g16640Os.14411.1.S1_at11/116+9563129..9565963Carboxyl-terminal peptidase, putative, expressed
LOC_Os06g16640Os.9827.1.S1_at1/116+9563129..9565963Carboxyl-terminal peptidase, putative, expressed
LOC_Os06g16650OsAffx.15462.1.S1_at11/116+9572223..9572887hypothetical protein
LOC_Os06g16660Os.10827.1.S1_x_at8/116+9588785..9592072transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16660Os.46055.2.S1_x_at5/116+9588785..9592072transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16670OsAffx.25936.1.S1_at8/116+9595044..9598682transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16670OsAffx.25936.1.S1_s_at8/116+9595044..9598682transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16670OsAffx.25936.7.S1_s_at7/116+9595044..9598682transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16670OsAffx.25936.2.S1_x_at5/116+9595044..9598682transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16670OsAffx.25936.5.S1_x_at4/116+9595044..9598682transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16670Os.56077.1.S1_x_at1/116+9595044..9598682transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15462.1.S1_at--382--4891Chr06:9572653..9572677 (25 bp)
GCTTTCTTCACAACGGTCTTAGCCA
LOC_Os06g16650
OsAffx.15462.1.S1_at--752--9551Chr06:9572649..9572673 (25 bp)
TCTTCACAACGGTCTTAGCCATCAG
LOC_Os06g16650
OsAffx.15462.1.S1_at--410--7131Chr06:9572638..9572662 (25 bp)
GTCTTAGCCATCAGGACTTCTGGAG
LOC_Os06g16650
OsAffx.15462.1.S1_at--788--391Chr06:9572629..9572653 (25 bp)
ATCAGGACTTCTGGAGGCAACCTCT
LOC_Os06g16650
OsAffx.15462.1.S1_at--166--5671Chr06:9572624..9572648 (25 bp)
GACTTCTGGAGGCAACCTCTTGAGT
LOC_Os06g16650
OsAffx.15462.1.S1_at--1006--7991Chr06:9572617..9572641 (25 bp)
GGAGGCAACCTCTTGAGTGCCATGC
LOC_Os06g16650
OsAffx.15462.1.S1_at--806--2631Chr06:9572611..9572635 (25 bp)
AACCTCTTGAGTGCCATGCCACTAG
LOC_Os06g16650
OsAffx.15462.1.S1_at--673--8891Chr06:9572604..9572628 (25 bp)
TGAGTGCCATGCCACTAGCCCTAGA
LOC_Os06g16650
OsAffx.15462.1.S1_at--837--9991Chr06:9572589..9572613 (25 bp)
TAGCCCTAGACACTGCAATCCTGTA
LOC_Os06g16650
OsAffx.15462.1.S1_at--119--4311Chr06:9572585..9572609 (25 bp)
CCTAGACACTGCAATCCTGTATGGC
LOC_Os06g16650
OsAffx.15462.1.S1_at--899--3031Chr06:9572573..9572597 (25 bp)
AATCCTGTATGGCAGGTGCAGCCAT
LOC_Os06g16650
Target Sequence 
GCTTTCTTCACAACGGTCTTAGCCATCAGGACTTCTGGAGGCAACCTCTTGAGTGCCATGCCACTAGCCCTAGACACTGC
AATCCTGTATGGCAGGTGCAGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15462.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis