Browse Element(s) Details


OsAffx.15471.1.S1_at

Description tigr:9634.m01741
TID=OsAffx.15471.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1727011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17220NANA6+9974239..9975881UDP-glucoronosyl/UDP-glucosyl transferase family protein, putative
LOC_Os06g17230OsAffx.32056.1.S1_at11/116+9977198..9982699transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17230OsAffx.32056.1.S1_x_at11/116+9977198..9982699transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17230OsAffx.30536.1.S1_x_at1/116+9977198..9982699transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17240OsAffx.10637.1.S1_s_at11/116+9984252..9987938transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17240OsAffx.10637.3.S1_s_at11/116+9984252..9987938transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17240OsAffx.10637.4.S1_s_at8/116+9984252..9987938transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17250NANA6+9990834..9992306glucosyltransferase, putative
LOC_Os06g17260OsAffx.27683.1.S1_at10/116+9995898..9997325UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g17270OsAffx.15471.1.S1_at11/116+9999558..9999839hypothetical protein
LOC_Os06g17280Os.53666.1.S1_s_at11/116+10002547..10005954PHD-finger family protein, expressed
LOC_Os06g17280Os.53666.1.S1_x_at11/116+10002547..10005954PHD-finger family protein, expressed
LOC_Os06g17290Os.17915.1.S1_at11/116+10012886..10016979phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os06g17300OsAffx.4860.1.S1_at11/116+10022892..10023125hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15471.1.S1_at--448--8371Chr06:9999783..9999807 (25 bp)
GGCGAAGCTCGTCACCACCTTGATG
LOC_Os06g17270
OsAffx.15471.1.S1_at--415--5391Chr06:9999780..9999804 (25 bp)
GAAGCTCGTCACCACCTTGATGGCC
LOC_Os06g17270
OsAffx.15471.1.S1_at--207--3631Chr06:9999765..9999789 (25 bp)
CTTGATGGCCCTGCTTTATTATGAT
LOC_Os06g17270
OsAffx.15471.1.S1_at--872--871Chr06:9999761..9999785 (25 bp)
ATGGCCCTGCTTTATTATGATCTGG
LOC_Os06g17270
OsAffx.15471.1.S1_at--512--4891Chr06:9999753..9999777 (25 bp)
GCTTTATTATGATCTGGCGGCATTT
LOC_Os06g17270
OsAffx.15471.1.S1_at--748--10411Chr06:9999750..9999774 (25 bp)
TTATTATGATCTGGCGGCATTTGTG
LOC_Os06g17270
OsAffx.15471.1.S1_at--763--3571Chr06:9999733..9999757 (25 bp)
CATTTGTGGCTGAGGCACTAGGGCA
LOC_Os06g17270
OsAffx.15471.1.S1_at--1048--3091Chr06:9999683..9999707 (25 bp)
GAAGTTCTCCCCTCCGGTATGGGAG
LOC_Os06g17270
OsAffx.15471.1.S1_at--569--9291Chr06:9999676..9999700 (25 bp)
TCCCCTCCGGTATGGGAGAAGAGGA
LOC_Os06g17270
OsAffx.15471.1.S1_at--837--9691Chr06:9999635..9999659 (25 bp)
TCAATCAAGCTCCAGGTAGTGGCAA
LOC_Os06g17270
OsAffx.15471.1.S1_at--574--9711Chr06:9999631..9999655 (25 bp)
TCAAGCTCCAGGTAGTGGCAAAAAT
LOC_Os06g17270
Target Sequence 
GGCGAAGCTCGTCACCACCTTGATGGCCCTGCTTTATTATGATCTGGCGGCATTTGTGGCTGAGGCACTAGGGCAGGCGG
GGAAGAAATGGGACTGGGGAGAAGTTCTCCCCTCCGGTATGGGAGAAGAGGAGCTTGCCAGTGCCTTATCAATCAAGCTC
CAGGTAGTGGCAAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15471.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis