Browse Element(s) Details


OsAffx.15660.1.S1_at

Description tigr:9634.m02814
TID=OsAffx.15660.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2937010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29340OsAffx.4960.1.S1_at10/116+16763030..16769687Protein kinase domain containing protein, expressed
LOC_Os06g29350Os.50335.1.S1_at11/116+16773135..16784412myosin, putative, expressed
LOC_Os06g29350OsAffx.7882.1.S1_at6/116+16773135..16784412myosin, putative, expressed
LOC_Os06g29350OsAffx.7882.1.S1_x_at3/116+16773135..16784412myosin, putative, expressed
LOC_Os06g29350Os.50543.1.S1_x_at1/116+16773135..16784412myosin, putative, expressed
LOC_Os06g29360NANA6+16784964..16786115hypothetical protein
LOC_Os06g29370OsAffx.15660.1.S1_at10/116+16790222..16792143hypothetical protein
LOC_Os06g29380Os.22732.1.A1_at11/116+16792654..16798778Phospholipid-transporting ATPase 9, putative, expressed
LOC_Os06g29390OsAffx.15661.1.S1_at11/116+16809193..16809438hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15660.1.S1_at--930--1771Chr06:16790337..16790361 (25 bp)
ACCGGCACACAACTTGTCCTCGGCT
LOC_Os06g29370
OsAffx.15660.1.S1_at--108--9271Chr06:16790383..16790407 (25 bp)
TCCTCGGAGGCATCTGACGCATAAG
LOC_Os06g29370
OsAffx.15660.1.S1_at--52--9451Chr06:16790386..16790410 (25 bp)
TCGGAGGCATCTGACGCATAAGAGA
LOC_Os06g29370
OsAffx.15660.1.S1_at--193--3551NONE
CATCTGACGCATAAGAGAGAGGGCT
NONE
OsAffx.15660.1.S1_at--89--1091Chr06:16791782..16791803 (22 bp)
AGGGCTCAGAGTGGTCGCTTGCACT
LOC_Os06g29370
OsAffx.15660.1.S1_at--94--9651Chr06:16791784..16791808 (25 bp)
TCAGAGTGGTCGCTTGCACTTACAG
LOC_Os06g29370
OsAffx.15660.1.S1_at--399--4931Chr06:16791795..16791819 (25 bp)
GCTTGCACTTACAGCATCAGCATCA
LOC_Os06g29370
OsAffx.15660.1.S1_at--527--3911Chr06:16791842..16791866 (25 bp)
CGGCGCCCTCGTTGCCAGGGTACGA
LOC_Os06g29370
OsAffx.15660.1.S1_at--185--3791Chr06:16791849..16791873 (25 bp)
CTCGTTGCCAGGGTACGAGGTGTCC
LOC_Os06g29370
OsAffx.15660.1.S1_at--942--8471Chr06:16791953..16791977 (25 bp)
TGGCGGTGACCGTCCTGTCCTGCGT
LOC_Os06g29370
OsAffx.15660.1.S1_at--241--5831Chr06:16791960..16791984 (25 bp)
GACCGTCCTGTCCTGCGTCGTCGGA
LOC_Os06g29370
Target Sequence 
ACCGGCACACAACTTGTCCTCGGCTTCCACCGGTGCGCAGGGCTCCTCCTCGGAGGCATCTGACGCATAAGAGAGAGGGC
TCAGAGTGGTCGCTTGCACTTACAGCATCAGCATCACCGAGAATAATGGCGGCGACGACGGCGCCCTCGTTGCCAGGGTA
CGAGGTGTCCGGCGCCGCCGCCGCGGCGACCCGGCTTCACGGCTCGCCGGGGTCGGTCGGCGCGTTCTTGGCGGTGCTCG
CCGCCGTGGTGGCGGTGACCGTCCTGTCCTGCGTCGTCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15660.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis