Browse Element(s) Details


OsAffx.15661.1.S1_at

Description tigr:9634.m02816
TID=OsAffx.15661.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2939011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29350Os.50335.1.S1_at11/116+16773135..16784412myosin, putative, expressed
LOC_Os06g29350OsAffx.7882.1.S1_at6/116+16773135..16784412myosin, putative, expressed
LOC_Os06g29350OsAffx.7882.1.S1_x_at3/116+16773135..16784412myosin, putative, expressed
LOC_Os06g29350Os.50543.1.S1_x_at1/116+16773135..16784412myosin, putative, expressed
LOC_Os06g29360NANA6+16784964..16786115hypothetical protein
LOC_Os06g29370OsAffx.15660.1.S1_at10/116+16790222..16792143hypothetical protein
LOC_Os06g29380Os.22732.1.A1_at11/116+16792654..16798778Phospholipid-transporting ATPase 9, putative, expressed
LOC_Os06g29390OsAffx.15661.1.S1_at11/116+16809193..16809438hypothetical protein
LOC_Os06g29400Os.23980.1.S1_at11/116+16824603..16835196Surp module family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15661.1.S1_at--313--2371Chr06:16809384..16809408 (25 bp)
AAACGGAAGGTCACTGCGACAACAA
LOC_Os06g29390
OsAffx.15661.1.S1_at--401--7831Chr06:16809376..16809400 (25 bp)
GGTCACTGCGACAACAAGATTGGCA
LOC_Os06g29390
OsAffx.15661.1.S1_at--1134--2211Chr06:16809363..16809387 (25 bp)
ACAAGATTGGCATTGTCTTCGTTGA
LOC_Os06g29390
OsAffx.15661.1.S1_at--129--6611Chr06:16809359..16809383 (25 bp)
GATTGGCATTGTCTTCGTTGAGGAT
LOC_Os06g29390
OsAffx.15661.1.S1_at--561--2751Chr06:16809330..16809354 (25 bp)
AAGACGGGAGAACGCGAGGCTGAGA
LOC_Os06g29390
OsAffx.15661.1.S1_at--249--6151Chr06:16809267..16809291 (25 bp)
GAGGTGGTCGCAAGGTGCTTCCTAC
LOC_Os06g29390
OsAffx.15661.1.S1_at--830--8591Chr06:16809263..16809287 (25 bp)
TGGTCGCAAGGTGCTTCCTACGTGT
LOC_Os06g29390
OsAffx.15661.1.S1_at--819--3211Chr06:16809257..16809281 (25 bp)
CAAGGTGCTTCCTACGTGTCTCGAG
LOC_Os06g29390
OsAffx.15661.1.S1_at--59--7331Chr06:16809253..16809277 (25 bp)
GTGCTTCCTACGTGTCTCGAGCTTG
LOC_Os06g29390
OsAffx.15661.1.S1_at--911--9931Chr06:16809245..16809269 (25 bp)
TACGTGTCTCGAGCTTGCCGCATCG
LOC_Os06g29390
OsAffx.15661.1.S1_at--728--7451Chr06:16809242..16809266 (25 bp)
GTGTCTCGAGCTTGCCGCATCGCGC
LOC_Os06g29390
Target Sequence 
AAACGGAAGGTCACTGCGACAACAAGATTGGCATTGTCTTCGTTGAGGATGGAGAAGACGGGAGAACGCGAGGCTGAGAG
AGAGGGGGACGAGGACCAGGGCACCGACGACAAGGTGGAGGTGGTCGCAAGGTGCTTCCTACGTGTCTCGAGCTTGCCGC
ATCGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15661.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis